diff --git a/plugins/woocommerce/changelog/fix-33348 b/plugins/woocommerce/changelog/fix-33348
new file mode 100644
index 00000000000..b8f6815f040
--- /dev/null
+++ b/plugins/woocommerce/changelog/fix-33348
@@ -0,0 +1,4 @@
+Significance: patch
+Type: performance
+
+Improve memory usage in HPOS sync CLI tool.
diff --git a/plugins/woocommerce/src/Database/Migrations/CustomOrderTable/CLIRunner.php b/plugins/woocommerce/src/Database/Migrations/CustomOrderTable/CLIRunner.php
index 65446c9b870..1e955909213 100644
--- a/plugins/woocommerce/src/Database/Migrations/CustomOrderTable/CLIRunner.php
+++ b/plugins/woocommerce/src/Database/Migrations/CustomOrderTable/CLIRunner.php
@@ -219,6 +219,12 @@ class CLIRunner {
 
 			$orders_remaining = count( $this->synchronizer->get_next_batch_to_process( 1 ) ) > 0;
 			$order_count      = $remaining_count - $batch_size;
+
+			if ( function_exists( 'wp_cache_supports' ) && wp_cache_supports( 'flush_runtime' ) ) {
+				wp_cache_flush_runtime();
+			}
+
+			$GLOBALS['wpdb']->flush();
 		}
 
 		$progress->finish();