diff --git a/plugins/woocommerce/changelog/update-38979-override-jetpack-data-endpont b/plugins/woocommerce/changelog/update-38979-override-jetpack-data-endpont
new file mode 100644
index 00000000000..e5de76ecf79
--- /dev/null
+++ b/plugins/woocommerce/changelog/update-38979-override-jetpack-data-endpont
@@ -0,0 +1,4 @@
+Significance: minor
+Type: fix
+
+Override /jetpack/v4/connection/data to return 404 to fix conflict with Android app flow
diff --git a/plugins/woocommerce/src/Admin/API/OnboardingPlugins.php b/plugins/woocommerce/src/Admin/API/OnboardingPlugins.php
index 1c61d635d04..4a4b5f44c95 100644
--- a/plugins/woocommerce/src/Admin/API/OnboardingPlugins.php
+++ b/plugins/woocommerce/src/Admin/API/OnboardingPlugins.php
@@ -11,6 +11,7 @@ defined( 'ABSPATH' ) || exit;
 
 use ActionScheduler;
 use Automattic\Jetpack\Connection\Manager;
+use Automattic\Jetpack\Constants;
 use Automattic\WooCommerce\Admin\PluginsHelper;
 use Automattic\WooCommerce\Admin\PluginsInstallLoggers\AsynPluginsInstallLogger;
 use WC_REST_Data_Controller;
@@ -124,6 +125,29 @@ class OnboardingPlugins extends WC_REST_Data_Controller {
 				),
 			)
 		);
+
+		/*
+		 * This is a temporary solution to override /jetpack/v4/connection/data endpoint
+		 * registered by Jetpack Connection when Jetpack is not installed.
+		 *
+		 * For more details, see https://github.com/woocommerce/woocommerce/issues/38979
+		 */
+		if ( Constants::get_constant( 'JETPACK__VERSION' ) === null && wp_is_mobile() ) {
+			register_rest_route(
+				'jetpack/v4',
+				'/connection/data',
+				array(
+					array(
+						'methods'             => 'GET',
+						'permission_callback' => '__return_true',
+						'callback'            => function() {
+							return new WP_REST_Response( null, 404 );
+						},
+					),
+				),
+				true
+			);
+		}
 	}
 
 	/**