Refactor to remove pandas dependency (#177)

* Use regular dicts for sleep pattern (WIP)

* Remove dataframes code from sleep pattern graph

* Reimplement UTC offset change handling

* Move label formatting in to a function

* Remove pandas!

* Fix linting issue

* Add dev requirements to generated requirements.txt

* Stop committing Pipfile.lock

Pipenv is designed to pin to a specific version of Python. Including the lock
file can lead to failed builds or broken package configurations on different
system architectures and/or Python versions.
This commit is contained in:
Christopher Charbonneau Wells 2020-12-02 20:15:22 -08:00 committed by GitHub
parent 6d601abf30
commit 3f1a7d9a9d
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
8 changed files with 100 additions and 670 deletions

6
.gitignore vendored
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@ -25,3 +25,9 @@ docker-compose.yml
# Django media root directory. # Django media root directory.
/media /media
# Pipfile.lock.
# Committing this file makes it difficult to support multiple Python versions as
# requirements can different between versions, but the Pipfile only supports
# locking to one version.
Pipfile.lock

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@ -3,7 +3,6 @@ ENV PYTHONUNBUFFERED 1
RUN pip install --upgrade pipenv gunicorn RUN pip install --upgrade pipenv gunicorn
WORKDIR /app WORKDIR /app
COPY Pipfile /app/ COPY Pipfile /app/
COPY Pipfile.lock /app/
RUN pipenv install --deploy --system RUN pipenv install --deploy --system
ADD manage.py /app/ ADD manage.py /app/
ADD api /app/api ADD api /app/api

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@ -8,7 +8,6 @@ djangorestframework = "*"
django-filter = "*" django-filter = "*"
django-widget-tweaks = "*" django-widget-tweaks = "*"
plotly = "*" plotly = "*"
pandas = "*"
faker = "*" faker = "*"
dj-database-url = "*" dj-database-url = "*"
gunicorn = "*" gunicorn = "*"

571
Pipfile.lock generated
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@ -1,571 +0,0 @@
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}
}
}

View File

@ -191,12 +191,6 @@ Python 3.6+, nginx, uwsgi and sqlite and should be sufficient for a few users
pipenv install --three pipenv install --three
pipenv shell pipenv shell
**Note:** Python dependencies are locked on x86-64 architecture. Installs
on other architectures (like Raspberry Pi's ARM) may result in a
``THESE PACKAGES DO NOT MATCH THE HASHES FROM Pipfile.lock!`` error. Add
the ``--skip-lock`` flag to the above command to suppress this error
(i.e.: ``pipenv install --three --dev --skip-lock``).
1. Create a production settings file and set the ``SECRET_KEY`` and ``ALLOWED_HOSTS`` values 1. Create a production settings file and set the ``SECRET_KEY`` and ``ALLOWED_HOSTS`` values
cp babybuddy/settings/production.example.py babybuddy/settings/production.py cp babybuddy/settings/production.example.py babybuddy/settings/production.py

View File

@ -6,4 +6,4 @@ set -euo pipefail
# Prevent heroku-buildpack-python from using pipenv instead of pip and requirements.txt. # Prevent heroku-buildpack-python from using pipenv instead of pip and requirements.txt.
# https://github.com/heroku/heroku-buildpack-python/issues/704 # https://github.com/heroku/heroku-buildpack-python/issues/704
rm Pipfile Pipfile.lock rm Pipfile

View File

@ -4,7 +4,6 @@ from collections import OrderedDict
from django.utils import timezone from django.utils import timezone
from django.utils.translation import gettext as _ from django.utils.translation import gettext as _
import pandas as pd
import plotly.offline as plotly import plotly.offline as plotly
import plotly.graph_objs as go import plotly.graph_objs as go
@ -19,36 +18,35 @@ def sleep_pattern(instances):
:param instances: a QuerySet of Sleep instances. :param instances: a QuerySet of Sleep instances.
:returns: a tuple of the the graph's html and javascript. :returns: a tuple of the the graph's html and javascript.
""" """
# TODO: Simplify this using the bar charts "base" property. times = {}
y_df = pd.DataFrame() labels = {}
text_df = pd.DataFrame()
last_end_time = None last_end_time = None
adjustment = None adjustment = None
df_index = 0
for instance in instances: for instance in instances:
start_time = timezone.localtime(instance.start) start_time = timezone.localtime(instance.start)
end_time = timezone.localtime(instance.end) end_time = timezone.localtime(instance.end)
start_date = start_time.date().isoformat() start_date = start_time.date().isoformat()
duration = instance.duration duration = instance.duration
if start_date not in times:
times[start_date] = []
if start_date not in labels:
labels[start_date] = []
# Check if the previous entry crossed midnight (see below). # Check if the previous entry crossed midnight (see below).
if adjustment: if adjustment:
# Fake (0) entry to keep the color switching logic working. # Fake (0) entry to keep the color switching logic working.
df_index = _add_sleep_entry( times[adjustment['column']].append(0)
y_df, text_df, 0, adjustment['column'], 0) labels[adjustment['column']].append(0)
# Real adjustment entry. # Real adjustment entry.
df_index = _add_sleep_entry( times[adjustment['column']].append(
y_df, adjustment['duration'].seconds/60)
text_df, labels[adjustment['column']].append(_format_label(
df_index, adjustment['duration'],
adjustment['column'], adjustment['start_time'],
adjustment['duration'].seconds/60, adjustment['end_time']))
'Asleep {} ({} to {})'.format(
duration_string(adjustment['duration']),
adjustment['start_time'].strftime('%I:%M %p'),
adjustment['end_time'].strftime('%I:%M %p')
)
)
last_end_time = timezone.localtime(adjustment['end_time']) last_end_time = timezone.localtime(adjustment['end_time'])
adjustment = None adjustment = None
@ -68,49 +66,53 @@ def sleep_pattern(instances):
day=start_time.day, hour=23, minute=59, second=0) day=start_time.day, hour=23, minute=59, second=0)
duration = end_time - start_time duration = end_time - start_time
if start_date not in y_df: if not last_end_time:
last_end_time = start_time.replace(hour=0, minute=0, second=0) last_end_time = start_time.replace(hour=0, minute=0, second=0)
# Awake time. # Awake time.
df_index = _add_sleep_entry( times[start_date].append((start_time - last_end_time).seconds/60)
y_df, labels[start_date].append(None)
text_df,
df_index,
start_date,
(start_time - last_end_time).seconds/60
)
# Asleep time. # Asleep time.
df_index = _add_sleep_entry( times[start_date].append(duration.seconds/60)
y_df, labels[start_date].append(_format_label(duration, start_time,
text_df, end_time))
df_index,
start_date,
duration.seconds/60,
'Asleep {} ({} to {})'.format(
duration_string(duration),
start_time.strftime('%I:%M %p'),
end_time.strftime('%I:%M %p')
)
)
# Update the previous entry duration if an offset change occurred. # Update the previous entry duration if an offset change occurred.
# This can happen when an entry crosses a daylight savings time change. # This can happen when an entry crosses a daylight savings time change.
if start_time.utcoffset() != end_time.utcoffset(): if start_time.utcoffset() != end_time.utcoffset():
diff = start_time.utcoffset() - end_time.utcoffset() diff = start_time.utcoffset() - end_time.utcoffset()
duration -= timezone.timedelta(seconds=diff.seconds) duration -= timezone.timedelta(seconds=diff.seconds)
y_df.at[df_index - 1, start_date] = duration.seconds/60 times[len(times) - 1] = duration.seconds/60
labels[len(labels) - 1] = _format_label(duration, start_time,
end_time)
last_end_time = end_time last_end_time = end_time
dates = list(y_df) dates = list(times.keys())
traces = [] traces = []
color = 'rgba(255, 255, 255, 0)' color = 'rgba(255, 255, 255, 0)'
for index, row in y_df.iterrows():
# Set iterator and determine maximum iteration for dates.
i = 0
max_i = 0
for date_times in times.values():
max_i = max(len(date_times), max_i)
while i < max_i:
y = {}
text = {}
for date in times.keys():
try:
y[date] = times[date][i]
text[date] = labels[date][i]
except IndexError:
y[date] = None
text[date] = None
i += 1
traces.append(go.Bar( traces.append(go.Bar(
x=dates, x=dates,
y=row, y=list(y.values()),
text=text_df.iloc[index], text=list(text.values()),
hoverinfo='text', hoverinfo='text',
marker={'color': color}, marker={'color': color},
marker_line_width=0, marker_line_width=0,
@ -155,23 +157,15 @@ def sleep_pattern(instances):
return utils.split_graph_output(output) return utils.split_graph_output(output)
def _add_sleep_entry(y_df, text_df, index, column, duration, text=''): def _format_label(duration, start_time, end_time):
""" """
Create a duration and text description entry in a DataFrame and return Formats a time block label.
the next index on success. :param duration: Duration.
:param y_df: the y values DataFrame. :param start_time: Start time.
:param text_df: the text values DataFrame. :param end_time: End time.
:param index: the index to target in both y_df and text_df. :return: Formatted string with duration, start, and end time.
:param column: the column (date) to make the entry in.
:param duration: the duration of the entry.
:param text: text to go with the entry (displays on graph hover).
:return: the next index of the DataFrames.
""" """
if column not in y_df: return 'Asleep {} ({} to {})'.format(
y_df.assign(**{column: 0 in range(0, len(y_df.index))}) duration_string(duration),
text_df.assign(**{column: 0 in range(0, len(text_df.index))}) start_time.strftime('%I:%M %p'),
index = 0 end_time.strftime('%I:%M %p'))
y_df.at[index, column] = duration
text_df.at[index, column] = text
return index + 1

View File

@ -1,43 +1,52 @@
-i https://pypi.python.org/simple -i https://pypi.python.org/simple
asgiref==3.2.10 asgiref==3.3.1; python_version >= '3.5'
boto3==1.14.25 boto3==1.16.28
botocore==1.17.25 botocore==1.19.28
defusedxml==0.6.0 certifi==2020.11.8
diff-match-patch==20200713 chardet==3.0.4
coverage==5.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4'
coveralls==2.2.0
defusedxml==0.6.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'
diff-match-patch==20200713; python_version >= '2.7'
dj-database-url==0.5.0 dj-database-url==0.5.0
django-filter==2.3.0 django-filter==2.4.0
django-import-export==2.3.0 django-import-export==2.4.0
django-storages==1.9.1 django-storages==1.10.1
django-widget-tweaks==1.4.8 django-widget-tweaks==1.4.8
django==3.0.8 django==3.1.4
djangorestframework==3.11.0 djangorestframework==3.12.2
docutils==0.15.2 docopt==0.6.2
easy-thumbnails==2.7 easy-thumbnails==2.7.1
et-xmlfile==1.0.1 et-xmlfile==1.0.1
faker==4.1.1 faker==4.18.0
flake8==3.8.4
gunicorn==20.0.4 gunicorn==20.0.4
idna==2.10; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
ipaddress==1.0.23
jdcal==1.4.1 jdcal==1.4.1
jmespath==0.10.0 jmespath==0.10.0; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'
markuppy==1.14 markuppy==1.14
numpy==1.19.1 mccabe==0.6.1
odfpy==1.4.1 odfpy==1.4.1
openpyxl==3.0.4 openpyxl==3.0.5
pandas==1.0.5 pillow==8.0.1; python_version >= '3.6'
pillow==7.2.0 plotly==4.13.0
plotly==4.9.0 psycopg2-binary==2.8.6
psycopg2-binary==2.8.5 pycodestyle==2.6.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
python-dateutil==2.8.1 pyflakes==2.2.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
python-dotenv==0.14.0 python-dateutil==2.8.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'
pytz==2020.1 python-dotenv==0.15.0
pytz==2020.4
pyyaml==5.3.1 pyyaml==5.3.1
requests==2.25.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'
retrying==1.3.3 retrying==1.3.3
s3transfer==0.3.3 s3transfer==0.3.3
six==1.15.0 six==1.15.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'
sqlparse==0.3.1 sqlparse==0.4.1; python_version >= '3.5'
tablib[html,ods,xls,xlsx,yaml]==2.0.0 tablib[html,ods,xls,xlsx,yaml]==2.0.0; python_version >= '3.5'
text-unidecode==1.3 text-unidecode==1.3
uritemplate==3.0.1 uritemplate==3.0.1
urllib3==1.25.9 ; python_version != '3.4' urllib3==1.26.2; python_version != '3.4'
whitenoise==5.1.0 whitenoise==5.2.0
xlrd==1.2.0 xlrd==1.2.0
xlwt==1.3.0 xlwt==1.3.0