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Archive entire twiki setup from owl as of today
2016-02-24 10:46:01 +00:00
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date 2013.08.19.21.44.34; author HilmarLapp; state Exp;
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@%META:TOPICINFO{author="HilmarLapp" date="1376948674" format="1.1" reprev="1.26" version="1.26"}%
---+ %MAKETEXT{"Phylogenetics Standards Interest Group Wiki" args="<nop>%WEB%"}%
Welcome to the website of the TDWG Interest Group on Phylogenetics Standards.
---++ %MAKETEXT{"Recent or Coming Events"}%
We are organizing a workshop on "[[PhyloSharingWorkshop2013][Sharing and delivery of reusable phylogenetic knowledge]]" at the 2013 TDWG Conference in Florence, Italy. The workshop will take place in the morning of Thursday, Oct 31.
---++ %MAKETEXT{"History"}%
A first workshop was held at the [[http://www.tdwg.org/conference2008/][2008 TDWG Annual Meeting]] in Perth/Fremantle, Australia. A [[http://www.tdwg.org/activities/phylogenetics/charter/][charter]] was finalized by Nico Cellinese and Hilmar Lapp, and approved in September 2009.
The 2008 workshop also resulted in a number of initial ideas for task groups, and was followed by a symposium during the main conference (see Session# 7 of the [[http://www.tdwg.org/conference2008/program/][conference program]]) with six presentations covering needs for and obstacles caused by a lack of appropriate standards, as well as opportunities offered by standards emerging in the field.
In Spring 2009, NESCent hosted the [[http://evoinfo.nescent.org/Database_Interop_Hackathon][Evolutionary Database Interoperability Hackathon]]. A group of collaborators who emerged from that event and subsequent activities articulated a vision for a grass-roots interoperability network for making evolutionary data broadly Web 3.0-compliant. This resulted in an [[http://www.evoio.org/wiki/Main_Page#The_EvoIO_INTEROP_project][NSF INTEROP grant proposal]] submission in July 2009. The proposal was declined from funding in March 2010.
At the [[http://www.tdwg.org/conference2009/][2009 TDWG conference]] a 4-day [[http://www.evoio.org/wiki/VoCamp1][Phyloinformatics VoCamp]] aimed at collaborative development of vocabularies and ontologies took place, as well as a working session on the development of [[http://regnum.ebc.uu.se/][RegNum]] and the [[http://www.ohio.edu/phylocode/][PhyloCode]].
At the [[http://www.tdwg.org/conference2010/][2010 TDWG conference]] in Woods Hole, MA, we organized a [[WorkingMeeting2010][full-day hands-on working meeting]]. One of its major outcomes is an in-depth report on [[LinkingTrees2010][Best Practices on Publishing Trees Electronically]], which led to the highly accessed publication on sharing phylogenies by [[http://www.biomedcentral.com/1756-0500/5/574][Stoltzfus, et al. (2012)]].
The group staged another workshop at the 2011 TDWG Conference in New Orleans, LA, on [[MIAPAWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]], with the goal to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications.
---++ %MAKETEXT{"Getting Involved"}%
We greatly welcome participation in any of the above and other activities. There is a mailing list ([[http://lists.tdwg.org/mailman/listinfo/tdwg-phylo][tdwg-phylo]]) open to anyone. If you have ideas for any of the above topics or would like to participate in whatever role, please get in touch with us - we would love to hear from you.
---++ %MAKETEXT{"Links and Resources"}%
* 2008 [[PhylogeneticsStandardsWorkshop][Phylogenetics Standards Workshop]]
* 2009 [[http://evoinfo.nescent.org/Database_Interop_Hackathon][Evolutionary Database Interoperability Hackathon]]
* 2009 [[http://www.evoio.org/wiki/NSF_INTEROP_2009][EvoIO NSF INTEROP proposal]]
* 2009 [[http://www.evoio.org/wiki/VoCamp1][Phyloinformatics VoCamp]]
* 2010 [[Working Meeting 2010]]
* 2011 Workshop on [[MIAPAWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]
* 2013 Symposium and Workshop on [[PhyloSharingWorkshop2013][Sharing and delivery of reusable phylogenetic knowledge]]
We usually communicate over the [[http://lists.tdwg.org/mailman/listinfo/tdwg-phylo][tdwg-phylo mailing list]].
---++ %MAKETEXT{"Acknowledgments"}%
The workshop and symposium at the 2008 TDWG Annual Meeting in Perth/Fremantle was co-sponsored by the Biodiversity Synthesis Center (<nop>BioSynC/EOL), the US National Evolutionary Synthesis Center (<nop>NESCent, NSF# EF-0423641), and TDWG.
The 2009 [[http://evoinfo.nescent.org/Database_Interop_Hackathon][Evolutionary Database Interoperability Hackathon]] and [[http://www.evoio.org/wiki/VoCamp1][Phyloinformatics VoCamp]] were sponsored by the US National Evolutionary Synthesis Center (<nop>NESCent, NSF# EF-0423641). The VoCamp received additional support from TDWG and [[http://www.lirmm.fr/xml/en/0001-01.html][LIRMM]] (University of Montpellier).
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We organized a workshop on "[[MIAPAWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]" at the 2011 TDWG Conference in New Orleans, LA. The workshop took place on Monday, Oct 17, and Tuesday, Oct 18. The goal of the workshop was to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications.
We also held a smaller meeting to continue work on the recently started [[http://www.evoio.org/wiki/Phyloreferencing_subgroup][Phyloreferencing standard initiative]].
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The group staged another workshop at the 2011 meeting, on [[MIAPAWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]].
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* Mailing list: [[http://lists.tdwg.org/mailman/listinfo/tdwg-phylo][tdwg-phylo]]
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At the [[http://www.tdwg.org/conference2010/][2010 TDWG conference]] in Woods Hole, MA, we organized a [[WorkingMeeting2010][full-day hands-on working meeting]]. One of its major outcomes is an in-depth report on [[LinkingTrees2010][Best Practices on Publishing Trees Electronically]].
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We are organizing a workshop on "[[MIAPAWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]" at the 2011 TDWG Conference in New Orleans, LA. The workshop will take place on Monday, Oct 17, and Tuesday, Oct 18. The goal of the workshop is to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications. Please register your interest at the [[http://groups.google.com/group/miapa-discuss][miapa-discuss mailing list]] so we can better estimate how many intend to come.
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We will also hold a smaller meeting to continue work on the recently started [[http://www.evoio.org/wiki/Phyloreferencing_subgroup][Phyloreferencing standard initiative]]. Please contact the [[http://www.tdwg.org/activities/phylogenetics/][Interest Group conveners]], or post to the [[http://lists.tdwg.org/mailman/listinfo/tdwg-phylo][tdwg-phylo]] mailing list if you are interested in participating.
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We are organizing a workshop on "[[PhylogeneticStandardsWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]" at the 2011 TDWG Conference in New Orleans, LA. The workshop will take place on Monday, Oct 17, and Tuesday, Oct 18. The goal of the workshop is to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications. Please register your interest at the [[http://groups.google.com/group/miapa-discuss][miapa-discuss mailing list]] so we can better estimate how many intend to come.
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We are organizing a workshop on "[[PhylogeneticStandardsWorkshop2011][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]" at the 2011 TDWG Conference in New Orleans, LS. The workshop will take place on Monday, Oct 17, and Tuesday, Oct 18. The goal of the workshop is to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications. Please register your interest at the [[http://groups.google.com/group/miapa-discuss][miapa-discuss mailing list]] so we can better estimate how many intend to come.
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We are organizing a workshop on "[[http://docs.google.com/document/pub?id=1DiuMEK7g_DJSLzT9ElAwEtJiKRXuQAvoc0JtfoX0sqE][Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard]]" at the 2011 TDWG Conference in New Orleans, LS. The workshop will take place on Monday, Oct 17, and Tuesday, Oct 18. The goal of the workshop is to determine how a future reporting standard for phylogenetic analyses can best serve biodiversity science and related research applications. Please register your interest at the [[http://groups.google.com/group/miapa-discuss][miapa-discuss mailing list]] so we can better estimate how many intend to come.
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We organized a [[WorkingMeeting2010][full-day hands-on working meeting at the 2010 TDWG Conference]] in Woods Hole, MA.
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* 2009 [[http://www.evoio.org/wiki/Main_Page#The_EvoIO_INTEROP_project][EvoIO NSF INTEROP proposal]]
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We are organizing a [[WorkingMeeting2010][full-day hands-on working meeting at the 2010 TDWG Conference]] in Woods Hole, MA, scheduled for Wednesday, Sep 29, 2010, in MRC #310.
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We are organizing a [[https://docs.google.com/document/pub?id=1ihH6MGKBCpH10sqvDK5ahLgvz6P_qP-TaN-vLt6O9j8][full-day hands-on working meeting at the 2010 TDWG Conference]] in Woods Hole, MA. Currently the workshop is scheduled within the conference program for Wednesday, Sep 29, 2010.
* Please join the discussion on the mailing list (see Gettting Involved) about the best targets for the workshop. You are welcome to create pages on this wiki to document your thoughts or to collect input.
* An idea called LinkingTrees2010 has already been posted.
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* WebTopicList - all topics in alphabetical order
* WebChanges - recent topic changes in this web
* WebNotify - subscribe to an e-mail alert sent when topics change
* WebRss, WebAtom - RSS and ATOM news feeds of topic changes
* WebStatistics - listing popular topics and top contributors
* WebPreferences - preferences of this web
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A first workshop was held at the [[http://www.tdwg.org/conference2008/][2008 TDWG Annual Meeting]] in Perth/Fremantle, Australia. A [[http://docs.google.com/View?id=dhdjhbvd_65ff7bp3dn][charter]] was finalized by Nico Cellinese and Hilmar Lapp, and approved in September 2009.
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In Spring 2009, NESCent hosted the [[http://evoinfo.nescent.org/Database_Interop_Hackathon][Evolutionary Database Interoperability Hackathon]]. A group of collaborators who emerged from that event and subsequent activities articulated a vision for a grass-roots interoperability network for making evolutionary data broadly Web 3.0-compliant. This resulted in an [[http://www.evoio.org/wiki/Main_Page#The_EvoIO_INTEROP_project][NSF INTEROP grant proposal]] submission in July 2009. The proposal was declined from funding by NSF in March 2010.
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Furthermore, a subset of the workshop participants are drafting a working group proposal for the <nop>EoL-sponsored [[http://www.fieldmuseum.org/research_collections/biosync/scientificmission.asp][Biodiversity Synthesis Center]] (<nop>BioSynC).
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The [[http://www.tdwg.org/conference2009/][2009 TDWG conference]] will feature a [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][VoCamp]] and a working session on the development of [[http://regnum.ebc.uu.se/][RegNum]] and the [[http://www.ohio.edu/phylocode/][PhyloCode]].
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* 2009 [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][Phyloinformatics VoCamp]]
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The 2009 [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][Phyloinformatics VoCamp]] is sponsored by the US National Evolutionary Synthesis Center (<nop>NESCent, NSF# EF-0423641), with additional support from TDWG and [[http://www.lirmm.fr/xml/en/0001-01.html][LIRMM]] (University of Montpellier).
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The [[http://www.tdwg.org/conference2009/][2009 TDWG conference]] will feature a [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][VoCamp]] and working session on the development of [[http://regnum.ebc.uu.se/][RegNum]] and the [[http://www.ohio.edu/phylocode/][PhyloCode]].
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* 2008 [[http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/PhylogeneticsStandardsWorkshop][Phylogenetic Standards Workshop]]
* 2009 [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][VoCamp]]
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The 2009 [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][VoCamp]] is sponsored by the US National Evolutionary Synthesis Center (<nop>NESCent, NSF# EF-0423641), TDWG, and [[http://www.lirmm.fr/xml/en/0001-01.html][LIRMM]] (University of Montpellier).
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A first workshop was held at the [[http://www.tdwg.org/conference2008/][2008 TDWG Annual Meeting]] in Perth/Fremantle, Australia. A [[http://docs.google.com/View?id=dhdjhbvd_65ff7bp3dn][charter has been finalized]] by Nico Cellinese and Hilmar Lapp, and has been approved in September 2009.
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The [[http://www.tdwg.org/conference2009/][2009 TDWG conference]] will feature a [[http://docs.google.com/View?id=dhdjhbvd_66gr5cdqfq][VoCamp]] and working session on [[http://regnum.ebc.uu.se/][RegNum]] and the [[http://www.ohio.edu/phylocode/][PhyloCode]]
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* 2008 Workshop: PhylogeneticsStandardsWorkshop
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The workshop and symposium at the 2008 TDWG Annual Meeting in Perth/Fremantle was co-sponsored by the Biodiversity Synthesis Center (<nop>BioSynC/EOL), the US National Evolutionary Synthesis Center (<nop>NESCent, NSF# EF-0423641), and TDWG.
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The Interest Group is in the process of being established. A first workshop was held at the [[http://www.tdwg.org/conference2008/][2008 TDWG Annual Meeting]] in Perth/Fremantle, Australia. A [[http://docs.google.com/View?id=dhdjhbvd_65ff7bp3dn][charter has been drafted]] by Nico Cellinese and Hilmar Lapp, and is currently being finalized to be approved in time for the 2009 conference.
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The 2008 workshop also resulted in a number of initial ideas for task groups, and was followed by a symposium during the main conference (see Session# 7 of the [[http://www.tdwg.org/conference2008/program/][conference program]]) with six presentations covering needs for and obstacles caused by a lack of appropriate standards, as well as opportunities offered by standards emerging in the field.
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At present (Fall 2008), the Interest Group is in the process of being established. A first workshop was held at the [[http://www.tdwg.org/conference2008/][2008 TDWG Annual Meeting]] in Perth/Fremantle, Australia. A charter is being drafted by Nico Cellinese and Hilmar Lapp. The workshop also resulted in a number of initial ideas for task groups, and was followed by a symposium during the main conference ( (see Session# 7 of the [[http://www.tdwg.org/conference2008/program/][conference program]]) with six presentations covering needs for and obstacles caused by a lack of appropriate standards, as well as opportunities offered by standards emerging in the field.
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* <input type="text" name="search" size="22" />&nbsp;<input type="submit" class="twikiSubmit" value="%MAKETEXT{"Search"}%" /> - [[WebSearchAdvanced][%MAKETEXT{"advanced search"}%]]
* WebTopicList - all topics in alphabetical order
* WebChanges - recent topic changes in this web
* WebNotify - subscribe to an e-mail alert sent when topics change
* WebRss, WebAtom - RSS and ATOM news feeds of topic changes
* WebStatistics - listing popular topics and top contributors
* WebPreferences - preferences of this web
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Welcome to the home of <b>%WIKITOOLNAME%.%WEB%</b>. This is a web-based collaboration area for ...
* MeetingMinutes
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<form action="%SCRIPTURLPATH%/search%SCRIPTSUFFIX%/%WEB%/SearchResult">
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* WebChanges: Find out recent modifications to the %WIKITOOLNAME%.%WEB% web.
* WebIndex: Display all %WIKITOOLNAME%.%WEB% topics in alphabetical order. See also the faster WebTopicList
* %NOTIFYTOPIC%: Subscribe to be automatically notified when something changes in the %WIKITOOLNAME%.%WEB% web.
* %STATISTICSTOPIC%: View access statistics of the %WIKITOOLNAME%.%WEB% web.
* %WEBPREFSTOPIC%: Preferences of the %WIKITOOLNAME%.%WEB% web.
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* You are currently in the %WIKITOOLNAME%.%WEB% web. The color code for this web is a (SPECIFY COLOR) background, so you know where you are.
* If you are not familiar with the %WIKITOOLNAME% collaboration tool, please visit %TWIKIWEB%.WelcomeGuest in the %WIKITOOLNAME%.%TWIKIWEB% web first.
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%META:TOPICINFO{author="PeterThoeny" date="1006602023" format="1.0" version="1.2"}%
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%INCLUDE{"%TWIKIWEB%.TWikiWebsTable"}%
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%META:TOPICINFO{author="PeterThoeny" date="997248001" format="1.0beta2" version="1.1"}%
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* WebIndex: Display all %WIKITOOLNAME%.%WEB% topics in alphabetical order.
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