wiki-archive/twiki/data/SDD/Primer/SummaryData.txt,v

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@%META:TOPICINFO{author="DonovanSharp" date="1152165810" format="1.1" reprev="1.7" version="1.7"}%
%META:TOPICPARENT{name="SddContents"}%
---++SDD Part 0: Introduction and Primer to the SDD Standard
---+++4.4 Elements of structured summary data in SDD.
A coded description requires three essential items: the names of the taxa being described, the terminology (characters and states) used to describe the taxa, and the coded descriptions themselves
<img src="%ATTACHURLPATH%/coded_data.gif"/>
An SDD instance document for coded summary data has the basic structure shown in Example 4.4.1.
---++++Example 4.4.1 - SDD structure of coded descriptions
<table bgcolor="#ddddff" border="0" width="80%" cellpadding="5" cellspacing="5" style="border-collapse: collapse" bordercolor="#111111">
<tr>
<td>
<verbatim>
<Datasets>
<Dataset>
<TaxonNames>
... provides a list of the entities (usually taxa) described
</TaxonNames>
<TaxonHierarchies>
... optional element to describe relationships between entities
</TaxonHierarchies>
<DescriptiveTerminology>
... provides the terminology and ontology used to describe the
entities (see DescriptiveConcepts, SddCharacters, CharacterTrees)
</DescriptiveTerminology>
<CodedDescriptions>
<SummaryData>
... the actual descriptions
</SummaryData>
</CodedDescriptions>
<MediaResources>
... optional element providing media (images, video, audio etc.) associated with
any of the above
</MediaResources>
</Dataset>
</Datasets>
</verbatim>
</td>
</tr>
</table>
Optional elements allow the taxa to be arranged into a hierarchy, and the recording of media files (images etc) for taxa or characters.
---++++Example 4.4.1 - A simple summary description of a taxon (<i>Korthalsella</i>)
<verbatim>
<CodedDescriptions>
<CodedDescription id="cd1">
<Representation>
<Label>Korthalsella</Label>
</Representation>
<Scope>
<TaxonName ref="t2"/>
</Scope>
<SummaryData>
<Categorical ref="c3">
<State ref="s7"/>
</Categorical>
<Categorical ref="c1">
<State ref="s2"/>
</Categorical>
<Quantitative ref="c4">
<Measure type="Min" value="5.0"/>
<Measure type="UMethUpper" value="10.0"/>
<Measure type="UMethlower" value="20.0"/>
<Measure type="Max" value="25.0"/>
</Quantitative>
</SummaryData>
</CodedDescription>
</CodedDescriptions>
</verbatim>
</td>
</tr>
</table>
-- Main.DonovanSharp - 02 Jun 2006
%META:FILEATTACHMENT{name="coded_data.gif" attr="" autoattached="1" comment="Wire diagram for coded data" date="1152157093" path="coded_data.gif" size="19803" user="Main.KevinThiele" version="1"}%
%META:FILEATTACHMENT{name="summarydata.jpg" attr="" autoattached="1" comment="" date="1151044814" path="summarydata.jpg" size="14449" user="Main.DonovanSharp" version="1"}%
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---+++4.4 SDD for coded summary data
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Summary data for aggregated or summarized data (using statistical measures, state distributions, ranges etc.). The element is optional to support descriptions containing only sample data or media objects.
Note: Characters are NOT required to have unique ref attributes! Data for one character may be recorded with different modifications (in spring/autumn, at tip/base).
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%ATTACHURL%/summarydata.jpg
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---++++Example 4.4.1 - A simple summary data description
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* Wire diagram for coded data: <br />
<img src="%ATTACHURLPATH%/coded_data.gif" alt="coded_data.gif" width='550' height='204' />
%META:FILEATTACHMENT{name="summarydata.jpg" attachment="summarydata.jpg" attr="" comment="" date="1151044813" path="summarydata.jpg" size="14449" stream="summarydata.jpg" user="Main.DonovanSharp" version="1"}%
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<Measure type="UMethUpper" value="20.0"/>
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---+++3.5 SDD for coded summary data
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---++++Example 3.3.1 - A simple summary data description
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<Label xml:lang="en-us">Korthalsella</Label>
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SDD Part 0: Introduction and Primer to the SDD Standard
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3.5 SDD for coded summary data
Example 3.3.1 - A simple summary data description
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@