wiki-archive/twiki/temp-gjr/BDI/SDD/Primer/SddContents.txt,v

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---++SDD Part 0: Introduction and Primer to the SDD Standard
---+++Table of Contents
* 1 [[SddIntroduction][Introduction]]
* 2 Streams
* 2.1 [[CodedData][Using SDD for coded summary descriptions]]
* 2.2 [[CodedSampleDescription][Using SDD for coded sample descriptions]]
* 2.3 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]]
* 2.4 [[IdentificationKeys][Using SDD for branching (i.e. dichotomous/polytomous) keys]]
* 3 Basics
* 3.1 [[SddDatasets][Datasets in SDD documents]]
* 3.2 [[TechnicalMetadata][Technical metadata]]
* 3.3 [[DatasetMetadata][Dataset metadata]]
* 3.4 [[TaxonNames][Defining taxon names]]
* 3.5 [[SpecimenNames][Defining specimen names]]
* 3.6 [[SddCharacters][Characters]]
* 3.6.1 Categorical characters
* 3.6.2 Quantitative characters
* 3.6.3 Text characters
* 3.6.4 Sequence characters
* 3.7 [[TaxonHierarchies][Taxon hierarchies]]
* 3.8 [[CharacterHierarchies][Character hierarchies]]
* 3.9 [[SddAudiences][Defining intended audience in SDD]]
* 3.10 [[SddLanguage][Language support in SDD]]
* 3.11 [[SddDependencies][Dependencies in SDD]]
* 3.12 [[SddMedia][Attaching Media to SDD Items]]
* 3.13 [[SddMapping][Mapping one character onto another]]
* 3.14 [[SddAgents][Referencing contributors and sources]]
* 3.15 [[DescriptiveConcepts][Data modifier definitions ( 3.17.1)]]
* 3.16 [[DescriptiveConcepts][Character grouping concepts within SDD (3.17.2)]]
* 3.17 [[DescriptiveConcepts][Sharing states across characters (Concept States, 3.17.3) ]]
* 3.18 [[SddPublications][Referencing publications]]
* 3.19 [[SddScope][Defining the scope of SDD output]]
* 4 [[SddFaq][FAQs]]
* 4.1 [[SuggestedCitations][Suggested citations]]
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* 3.15 [[DescriptiveConcepts][Using modifiers with SDD data]]
* 3.16 [[DescriptiveConcepts][Use of grouping concept within SDD]]
* 3.17 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
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* 2.4 [[DichotomousKeys][Using SDD for dichotomous keys]]
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* 5 [[SddFaq][FAQs]]
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* 3.5.1 Categorical characters
* 3.5.2 Quantitative characters
* 3.5.3 Text characters
* 3.5.4 Sequence characters
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* 3.4 [[SpecimenNames][Defining specimen names]]
* 3.5 [[SddCharacters][Characters]]
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* 3.6 [[TaxonHierarchies][Taxon hierarchies]]
* 3.7 [[CharacterHierarchies][Character hierarchies]]
* 3.8 [[SddAudiences][Defining intended audience in SDD]]
* 3.9 [[SddLanguage][Language support in SDD]]
* 3.10 [[SddDependencies][Dependencies in SDD]]
* 3.11 [[SddMedia][Attaching Media to SDD Items]]
* 3.12 [[SddMapping][Mapping one character onto another]]
* 3.13 [[SddAgents][Referencing contributors and sources]]
* 3.14 [[DescriptiveConcepts][Using modifiers with SDD data]]
* 3.15 [[DescriptiveConcepts][Use of grouping concept within SDD]]
* 3.16 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
* 3.17 [[SddPublications][Referencing publications]]
* 3.18 [[SddScope][Defining the scope of SDD output]]
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* 3.8 [[TaxonHierarchies][Taxon hierarchies]]
* 3.9 [[CharacterHierarchies][Character hierarchies]]
* 3.6 [[SddAudiences][Defining intended audience in SDD]]
* 3.7 [[SddLanguage][Language support in SDD]]
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* 4.2 [[SddMedia][Attaching Media to SDD Items]]
* 4.3 [[SddMapping][Mapping one character onto another]]
* 4.6 [[SddAgents][Referencing contributors and sources]]
* 4.8 [[DescriptiveConcepts][Using modifiers with SDD data]]
* 4.8 [[DescriptiveConcepts][Use of grouping concept within SDD]]
* 4.8 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
* 4.9 [[SddPublications][Referencing publications]]
* 4.10 [[SddScope][Defining the scope of SDD output]]
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* 3.11 [[SddSpecimen][Specimens in SDD documents]]
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* 3.8 [[TaxonHierarchies][Taxon hierarchies]]
* 3.9 [[CharacterHierarchies][Character hierarchies]]
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* 4.8 [[DescriptiveConcepts][Applying descriptive concepts accros SDD datasets]]
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* 3.6 [[SddAudiences][SDD audiences]]
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* 4.1 [[CodedDescription][<CodedDescription>]]
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* 4.7 [[DescriptiveTerminology][<DescriptiveTerminology>]]
* 4.8 [[DescriptiveConcepts][<DescriptiveConcepts>]]
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* 4.10 [[SddScope][<Scope>]]
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* 4 Miscellaneous elements
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* 4.2 [[SddMedia][<Media>]]
* 4.3 [[SddMapping][<Mapping>]]
* 4.4 [[SummaryData][<SummaryData>]]
* 4.5 [[SampleData][<SampleData>]]
* 4.6 [[SddAgents][<Agents>]]
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* 4.9 [[SddPublications][<Publications>]]
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* [[DocumentStatus][Status of this document]]
* 1.1 Background to the TDWG-SDD Subgroup
* 1.2 The nature of descriptive data in taxonomy
* 1.3 Goals of SDD
* 1.4 Basic structure of a simple SDD instance document
* 1.5 Beyond the simple instance...
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* 2.1.1 What are coded summary descriptions?
* 2.1.2 SDD for summary descriptions
* Box 2.1.1.1 - Simple examples of coded summary descriptions
* 2.1.3 SDD for sample data
* Box 2.1.1.2 - Example of raw (sample) descriptive data
* 2.1.2 Elements of structured data in SDD
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* 2.1.1 What are coded sample descriptions?
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* 2.3.1 Traditional natural language descriptions
* Box 2.3.1 - Typical natural language descriptions
* 2.3.2 Authored natural language descriptions
* 2.3.3 Marked up natural language descriptions
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* 2.4.1 Traditional dichotomous keys
* Box 2.4.1 - Typical dichotomous keys
* 2.4.2 SDD representation of dichotomous keys
* 2.4.3 Dichotomous keys using statements
* 2.4.4 Dichotomous keys using questions
* 2.4.5 Optional elements in SDD dichotomous keys
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* 3.4.1 Defining [[TaxonNames][taxon names]]
* 3.4.2 Elements within the [[TaxonNames][<TaxonNames>]] element
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* 3.5.5 Color range characters
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* 3.9.1 Taxon hierarchy elements
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* 3.4.2.1 <NomenclaturalCode>
* 3.4.2.2 <Rank>
* 3.4.2.3 <CanonicalName>
* 3.4.2.4 <CanonicalAuthorship>
* 3.4.2.5 <ConceptSuffix>
* 3.4.2.6 <Race>
* 3.4.2.7 <TaxonPlacement>
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* 3.5.4.1 <Assumptions>
* 3.5.4.1 <SequenceType>
* 3.5.4.1 <SymbolLength>
* 3.5.4.1 <GapSymbol>
* 3.5.4.1 <EnableAmbiguitySymbols>
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* 3.9.1.1 [[SddScope][<Scope>]]
* 3.9.1.2 <TaxonHierarchyType>
* 3.9.1.3 [[SddNodes][<Nodes>]]
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* 3.9.1 [[SddScope][<Scope>]]
* 3.9.2 <DesignedFor>
* 3.9.3 <ShouldContainAllCharacters>
* 3.9.4 [[SddNodes][<Nodes>]]
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* 2.1 [[CodedData][Using SDD for coded summary data]]
* 2.1.1 What is coded summary data?
* 2.1 [[CodedData][Using SDD for coded data]]
* 2.1.1 What is coded data?
* 2.1.2 SDD for summary data
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* 2.2 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]]
* 2.2.1 Traditional natural language descriptions
* Box 2.2.1 - Typical natural language descriptions
* 2.2.2 Authored natural language descriptions
* 2.2.3 Marked up natural language descriptions
* 2.3 [[DichotomousKeys][Using SDD for dichotomous keys]]
* 2.3.1 Traditional dichotomous keys
* Box 2.3.1 - Typical dichotomous keys
* 2.3.2 SDD representation of dichotomous keys
* 2.3.3 Dichotomous keys using statements
* 2.3.4 Dichotomous keys using questions
* 2.3.5 Optional elements in SDD dichotomous keys
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* 3.2 TechnicalMetadata
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* 3.4.1 Defining TaxonNames
* 3.4.2 Elements within TaxonNames
* 3.4.2.1 NomenclaturalCode
* 3.4.2.2 Rank
* 3.4.2.3 CanonicalName
* 3.4.2.4 CanonicalAuthorship
* 3.4.2.5 ConceptSuffix
* 3.4.2.6 Race
* 3.4.2.7 TaxonPlacement
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* 3.5.4.1 Assumptions
* 3.5.4.1 SequenceType
* 3.5.4.1 SymbolLength
* 3.5.4.1 GapSymbol
* 3.5.4.1 EnableAmbiguitySymbols
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* 3.8 TaxonHierarchies
* 3.9.1 TaxonHierarchy elements
* 3.9.1.1 [[SddScope][Scope]]
* 3.9.1.2 TaxonHierarchyType
* 3.9.1.3 [[SddNodes][Nodes]]
* 3.9 CharacterHierarchies
* 3.9.1 [[SddScope][Scope]]
* 3.9.2 DesignedFor
* 3.9.3 ShouldContainAllCharacters
* 3.9.4 [[SddNodes][Nodes]]
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* 4 Miscellaneous
* 4.1 CodedDescription
* 4.2 [[SddMedia][Media]]
* 4.3 [[SddMapping][Mapping]]
* 4.4 SummaryData
* 4.5 SampleData
* 4.6 [[SddAgents][Agents]]
* 4.7 DescriptiveTerminology
* 4.8 DescriptiveConcepts
* 4.9 [[SddPublications][Publications]]
2.4 Using SDD for raw observation data
6 FAQs
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* 4.? CodedDescription
* 4.? [[SddMedia][Media]]
* 4.? [[SddMapping][Mapping]]
* 4.? SummaryData
* 4.? SampleData
* 4.? [[SddAgents][Agents]]
* 4.? DescriptiveTerminology
* 4.? DescriptiveConcepts
* 4.? [[SddPublications][Publications]]
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* 3.4.2.1 Rank
* 3.4.2.1 CanonicalName
* 3.4.2.1 CanonicalAuthorship
* 3.4.2.1 ConceptSuffix
* 3.4.2.1 Race
* 3.4.2.1 TaxonPlacement
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* 3.2 [[TechnicalMetadata][Technical metadata]]
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* 3.8 [[TaxonHierarchies][Taxon heirarchies]]
* 3.9 [[CharacterHierarchies][Character heirarchies]]
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* Box 2.1.1.2 - Example of raw (specimen) descriptive data
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4 Elements
5 Miscellaneous
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* 3.4 [[TaxonNames]][Defining taxon names]]
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<table border="0" cellpadding="0" cellspacing="0" style="border-collapse: collapse" bordercolor="#111111" width="100%" id="AutoNumber3">
<tr>
<td align="center">
<h1>SDD Part 0: Introduction and Primer to the SDD Standard</h1>
</td>
</tr>
</table>
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<h2>Table of Contents</h2>
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<p>
&nbsp; Contents<br>
1&nbsp;&nbsp; <a href="Introduction.htm">Introduction</a><br>
&nbsp;&nbsp;&nbsp;1.1 Background to the TDWG-SDD Subgroup<br>
&nbsp;&nbsp;&nbsp;1.2 The nature of descriptive data in taxonomy<br>
&nbsp;&nbsp;&nbsp;1.3 Goals of SDD<br>
&nbsp;&nbsp;&nbsp;1.4 Basic structure of a simple SDD instance document<br>
&nbsp;&nbsp;&nbsp;1.5 Beyond the simple instance...<br>
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2&nbsp;&nbsp; Streams<br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_coded_data.htm">2.1 Using SDD for coded data</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.1.1 What is coded data?<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Box 2.1.1.1 - Simple examples of coded summary descriptions<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Box 2.1.1.2 - Example of raw (specimen) descriptive
data<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.1.2 Elements of structured data in SDD<br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_natural_language.htm">2.2 Using SDD for natural language descriptions</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.2.1 Traditional natural language descriptions<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Box 2.2.1 - Typical natural language descriptions<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.2.2 Authored natural language descriptions<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.2.3 Marked up natural language descriptions<br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_dichotomous.htm">2.3 Using SDD for dichotomous keys</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.3.1 Traditional dichotomous keys<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Box 2.3.1 - Typical dichotomous keys<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.3.2 SDD representation of dichotomous keys<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.3.3 Dichotomous keys using statements<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.3.4 Dichotomous keys using questions<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;2.3.5 Optional elements in SDD dichotomous keys<br>
3&nbsp;&nbsp; Basics<br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_Datasets.htm">3.1 Datasets in SDD documents</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_Technical_Metadata.htm">3.2 Technical metadata</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_Dataset_Metadata.htm">3.3 Dataset metadata</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_taxon_names.htm">3.4 Defining taxon names</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_characters.htm">3.5 Characters</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.5.1 Categorical characters<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.5.2 Quantitative characters<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.5.3 Text characters<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.5.4 Sequence characters<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;3.5.5 Color range characters<br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_audiences.htm">3.6 SDD audiences</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_language.htm">3.7 Language support in SDD</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_taxon_hierarchies.htm">3.8 Taxon heirarchies</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_char_hierarchies.htm">3.9 Character heirarchies</a><br>
&nbsp;&nbsp;&nbsp;&nbsp;<a href="SDD_dependencies.htm">3.10 Dependencies in SDD</a><br>
4&nbsp;&nbsp; Elements<br>
5&nbsp;&nbsp; Miscellaneous<br>
&nbsp;&nbsp;&nbsp;&nbsp;2.4 Using SDD for raw observation data<br>
6&nbsp;&nbsp; FAQs</p>
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