head 1.32; access; symbols; locks; strict; 1.32 date 2007.07.31.10.06.22; author GregorHagedorn; state Exp; branches; next 1.31; 1.31 date 2007.05.07.21.56.26; author GregorHagedorn; state Exp; branches; next 1.30; 1.30 date 2007.04.17.16.34.28; author GregorHagedorn; state Exp; branches; next 1.29; 1.29 date 2006.09.07.07.19.07; author DonovanSharp; state Exp; branches; next 1.28; 1.28 date 2006.08.30.01.31.57; author DonovanSharp; state Exp; branches; next 1.27; 1.27 date 2006.08.29.03.12.50; author DonovanSharp; state Exp; branches; next 1.26; 1.26 date 2006.07.24.01.04.50; author DonovanSharp; state Exp; branches; next 1.25; 1.25 date 2006.07.20.02.05.53; author DonovanSharp; state Exp; branches; next 1.24; 1.24 date 2006.07.20.01.00.14; author DonovanSharp; state Exp; branches; next 1.23; 1.23 date 2006.07.19.03.37.54; author DonovanSharp; state Exp; branches; next 1.22; 1.22 date 2006.07.19.01.15.41; author DonovanSharp; state Exp; branches; next 1.21; 1.21 date 2006.07.18.01.05.58; author DonovanSharp; state Exp; branches; next 1.20; 1.20 date 2006.07.17.23.42.30; author DonovanSharp; state Exp; branches; next 1.19; 1.19 date 2006.07.17.05.42.32; author DonovanSharp; state Exp; branches; next 1.18; 1.18 date 2006.07.07.06.56.52; author DonovanSharp; state Exp; branches; next 1.17; 1.17 date 2006.07.06.04.00.55; author KevinThiele; state Exp; branches; next 1.16; 1.16 date 2006.07.06.01.35.03; author DonovanSharp; state Exp; branches; next 1.15; 1.15 date 2006.07.05.05.42.57; author DonovanSharp; state Exp; branches; next 1.14; 1.14 date 2006.07.05.01.17.31; author DonovanSharp; state Exp; branches; next 1.13; 1.13 date 2006.07.04.02.36.00; author DonovanSharp; state Exp; branches; next 1.12; 1.12 date 2006.06.21.02.21.29; author DonovanSharp; state Exp; branches; next 1.11; 1.11 date 2006.06.15.05.08.39; author DonovanSharp; state Exp; branches; next 1.10; 1.10 date 2006.06.15.00.48.28; author DonovanSharp; state Exp; branches; next 1.9; 1.9 date 2006.06.14.05.41.29; author DonovanSharp; state Exp; branches; next 1.8; 1.8 date 2006.06.09.07.06.06; author DonovanSharp; state Exp; branches; next 1.7; 1.7 date 2006.06.09.06.02.03; author DonovanSharp; state Exp; branches; next 1.6; 1.6 date 2006.06.09.01.40.13; author DonovanSharp; state Exp; branches; next 1.5; 1.5 date 2006.06.08.01.24.57; author DonovanSharp; state Exp; branches; next 1.4; 1.4 date 2006.06.07.01.25.19; author DonovanSharp; state Exp; branches; next 1.3; 1.3 date 2006.06.02.06.19.29; author DonovanSharp; state Exp; branches; next 1.2; 1.2 date 2006.06.01.07.16.25; author DonovanSharp; state Exp; branches; next 1.1; 1.1 date 2006.06.01.02.24.17; author DonovanSharp; state Exp; branches; next ; desc @@ 1.32 log @none @ text @%META:TOPICINFO{author="GregorHagedorn" date="1185876382" format="1.1" version="1.32"}% ---++SDD Part 0: Introduction and Primer to the SDD Standard ---+++Table of Contents * 1 [[SddIntroduction][Introduction]] * 2 Streams * 2.1 [[CodedData][Using SDD for coded summary descriptions]] * 2.2 [[CodedSampleDescription][Using SDD for coded sample descriptions]] * 2.3 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]] * 2.4 [[IdentificationKeys][Using SDD for branching (i.e. dichotomous/polytomous) keys]] * 3 Basics * 3.1 [[SddDatasets][Datasets in SDD documents]] * 3.2 [[TechnicalMetadata][Technical metadata]] * 3.3 [[DatasetMetadata][Dataset metadata]] * 3.4 [[TaxonNames][Defining taxon names]] * 3.5 [[SpecimenNames][Defining specimen names]] * 3.6 [[SddCharacters][Characters]] * 3.6.1 Categorical characters * 3.6.2 Quantitative characters * 3.6.3 Text characters * 3.6.4 Sequence characters * 3.7 [[TaxonHierarchies][Taxon hierarchies]] * 3.8 [[CharacterHierarchies][Character hierarchies]] * 3.9 [[SddAudiences][Defining intended audience in SDD]] * 3.10 [[SddLanguage][Language support in SDD]] * 3.11 [[SddDependencies][Dependencies in SDD]] * 3.12 [[SddMedia][Attaching Media to SDD Items]] * 3.13 [[SddMapping][Mapping one character onto another]] * 3.14 [[SddAgents][Referencing contributors and sources]] * 3.15 [[DescriptiveConcepts][Data modifier definitions ( 3.17.1)]] * 3.16 [[DescriptiveConcepts][Character grouping concepts within SDD (3.17.2)]] * 3.17 [[DescriptiveConcepts][Sharing states across characters (Concept States, 3.17.3) ]] * 3.18 [[SddPublications][Referencing publications]] * 3.19 [[SddScope][Defining the scope of SDD output]] * 4 [[SddFaq][FAQs]] * 4.1 [[SuggestedCitations][Suggested citations]] @ 1.31 log @none @ text @d1 1 a1 1 %META:TOPICINFO{author="GregorHagedorn" date="1178574986" format="1.1" version="1.31"}% d31 3 a33 3 * 3.15 [[DescriptiveConcepts][Using modifiers with SDD data]] * 3.16 [[DescriptiveConcepts][Use of grouping concept within SDD]] * 3.17 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]] @ 1.30 log @none @ text @d1 1 a1 1 %META:TOPICINFO{author="GregorHagedorn" date="1176827668" format="1.1" version="1.30"}% d11 1 a11 1 * 2.4 [[DichotomousKeys][Using SDD for dichotomous keys]] d37 1 @ 1.29 log @@ text @d1 1 a1 2 %META:TOPICINFO{author="DonovanSharp" date="1157613547" format="1.1" version="1.29"}% %META:TOPICPARENT{name="WebTopicList"}% d36 1 a36 1 * 4 [[SddFaq][FAQs]]@ 1.28 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1156901517" format="1.1" version="1.28"}% d37 1 a37 1 * 5 [[SddFaq][FAQs]] @ 1.27 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1156821170" format="1.1" version="1.27"}% d20 4 a23 4 * 3.5.1 Categorical characters * 3.5.2 Quantitative characters * 3.5.3 Text characters * 3.5.4 Sequence characters @ 1.26 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153703090" format="1.1" version="1.26"}% d18 2 a19 2 * 3.4 [[SpecimenNames][Defining specimen names]] * 3.5 [[SddCharacters][Characters]] d24 13 a36 13 * 3.6 [[TaxonHierarchies][Taxon hierarchies]] * 3.7 [[CharacterHierarchies][Character hierarchies]] * 3.8 [[SddAudiences][Defining intended audience in SDD]] * 3.9 [[SddLanguage][Language support in SDD]] * 3.10 [[SddDependencies][Dependencies in SDD]] * 3.11 [[SddMedia][Attaching Media to SDD Items]] * 3.12 [[SddMapping][Mapping one character onto another]] * 3.13 [[SddAgents][Referencing contributors and sources]] * 3.14 [[DescriptiveConcepts][Using modifiers with SDD data]] * 3.15 [[DescriptiveConcepts][Use of grouping concept within SDD]] * 3.16 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]] * 3.17 [[SddPublications][Referencing publications]] * 3.18 [[SddScope][Defining the scope of SDD output]] @ 1.25 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153361153" format="1.1" version="1.25"}% d24 4 a27 4 * 3.8 [[TaxonHierarchies][Taxon hierarchies]] * 3.9 [[CharacterHierarchies][Character hierarchies]] * 3.6 [[SddAudiences][Defining intended audience in SDD]] * 3.7 [[SddLanguage][Language support in SDD]] d29 8 a36 8 * 4.2 [[SddMedia][Attaching Media to SDD Items]] * 4.3 [[SddMapping][Mapping one character onto another]] * 4.6 [[SddAgents][Referencing contributors and sources]] * 4.8 [[DescriptiveConcepts][Using modifiers with SDD data]] * 4.8 [[DescriptiveConcepts][Use of grouping concept within SDD]] * 4.8 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]] * 4.9 [[SddPublications][Referencing publications]] * 4.10 [[SddScope][Defining the scope of SDD output]] @ 1.24 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153357214" format="1.1" version="1.24"}% a28 1 * 3.11 [[SddSpecimen][Specimens in SDD documents]] @ 1.23 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153280274" format="1.1" version="1.23"}% a27 1 @ 1.22 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153271741" format="1.1" reprev="1.22" version="1.22"}% d24 2 d28 1 a28 2 * 3.8 [[TaxonHierarchies][Taxon hierarchies]] * 3.9 [[CharacterHierarchies][Character hierarchies]] d36 1 a36 1 * 4.8 [[DescriptiveConcepts][Applying descriptive concepts accros SDD datasets]] a39 1 @ 1.21 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153184758" format="1.1" reprev="1.21" version="1.21"}% d24 1 a24 1 * 3.6 [[SddAudiences][SDD audiences]] a29 1 * 4.1 [[CodedDescription][<CodedDescription>]] d33 3 a35 2 * 4.7 [[DescriptiveTerminology][<DescriptiveTerminology>]] * 4.8 [[DescriptiveConcepts][<DescriptiveConcepts>]] d37 1 a37 1 * 4.10 [[SddScope][<Scope>]] @ 1.20 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153179750" format="1.1" reprev="1.20" version="1.20"}% a29 1 * 4 Miscellaneous elements d31 3 a33 5 * 4.2 [[SddMedia][<Media>]] * 4.3 [[SddMapping][<Mapping>]] * 4.4 [[SummaryData][<SummaryData>]] * 4.5 [[SampleData][<SampleData>]] * 4.6 [[SddAgents][<Agents>]] d36 1 a36 1 * 4.9 [[SddPublications][<Publications>]] @ 1.19 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1153114952" format="1.1" reprev="1.19" version="1.19"}% a7 6 * [[DocumentStatus][Status of this document]] * 1.1 Background to the TDWG-SDD Subgroup * 1.2 The nature of descriptive data in taxonomy * 1.3 Goals of SDD * 1.4 Basic structure of a simple SDD instance document * 1.5 Beyond the simple instance... a9 6 * 2.1.1 What are coded summary descriptions? * 2.1.2 SDD for summary descriptions * Box 2.1.1.1 - Simple examples of coded summary descriptions * 2.1.3 SDD for sample data * Box 2.1.1.2 - Example of raw (sample) descriptive data * 2.1.2 Elements of structured data in SDD a10 1 * 2.1.1 What are coded sample descriptions? a11 4 * 2.3.1 Traditional natural language descriptions * Box 2.3.1 - Typical natural language descriptions * 2.3.2 Authored natural language descriptions * 2.3.3 Marked up natural language descriptions a12 6 * 2.4.1 Traditional dichotomous keys * Box 2.4.1 - Typical dichotomous keys * 2.4.2 SDD representation of dichotomous keys * 2.4.3 Dichotomous keys using statements * 2.4.4 Dichotomous keys using questions * 2.4.5 Optional elements in SDD dichotomous keys a17 2 * 3.4.1 Defining [[TaxonNames][taxon names]] * 3.4.2 Elements within the [[TaxonNames][<TaxonNames>]] element a23 1 * 3.5.5 Color range characters a26 1 * 3.9.1 Taxon hierarchy elements @ 1.18 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1152255412" format="1.1" version="1.18"}% a42 7 * 3.4.2.1 <NomenclaturalCode> * 3.4.2.2 <Rank> * 3.4.2.3 <CanonicalName> * 3.4.2.4 <CanonicalAuthorship> * 3.4.2.5 <ConceptSuffix> * 3.4.2.6 <Race> * 3.4.2.7 <TaxonPlacement> a48 5 * 3.5.4.1 <Assumptions> * 3.5.4.1 <SequenceType> * 3.5.4.1 <SymbolLength> * 3.5.4.1 <GapSymbol> * 3.5.4.1 <EnableAmbiguitySymbols> a53 3 * 3.9.1.1 [[SddScope][<Scope>]] * 3.9.1.2 <TaxonHierarchyType> * 3.9.1.3 [[SddNodes][<Nodes>]] a54 4 * 3.9.1 [[SddScope][<Scope>]] * 3.9.2 <DesignedFor> * 3.9.3 <ShouldContainAllCharacters> * 3.9.4 [[SddNodes][<Nodes>]] d69 1 @ 1.17 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="KevinThiele" date="1152158455" format="1.1" reprev="1.17" version="1.17"}% d50 1 a87 1 @ 1.16 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1152149703" format="1.1" version="1.16"}% a6 1 d15 2 d15 3 a17 5 * 2.1 [[CodedData][Using SDD for coded summary data]] * 2.1.1 What is coded summary data? * 2.1 [[CodedData][Using SDD for coded data]] * 2.1.1 What is coded data? * 2.1.2 SDD for summary data d22 14 a35 12 * 2.2 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]] * 2.2.1 Traditional natural language descriptions * Box 2.2.1 - Typical natural language descriptions * 2.2.2 Authored natural language descriptions * 2.2.3 Marked up natural language descriptions * 2.3 [[DichotomousKeys][Using SDD for dichotomous keys]] * 2.3.1 Traditional dichotomous keys * Box 2.3.1 - Typical dichotomous keys * 2.3.2 SDD representation of dichotomous keys * 2.3.3 Dichotomous keys using statements * 2.3.4 Dichotomous keys using questions * 2.3.5 Optional elements in SDD dichotomous keys d87 1 @ 1.15 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1152078177" format="1.1" reprev="1.15" version="1.15"}% d73 1 a85 1 @ 1.14 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1152062251" format="1.1" reprev="1.14" version="1.14"}% d83 1 @ 1.13 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1151980560" format="1.1" reprev="1.13" version="1.13"}% d37 1 a37 1 * 3.2 TechnicalMetadata d40 9 a48 9 * 3.4.1 Defining TaxonNames * 3.4.2 Elements within TaxonNames * 3.4.2.1 NomenclaturalCode * 3.4.2.2 Rank * 3.4.2.3 CanonicalName * 3.4.2.4 CanonicalAuthorship * 3.4.2.5 ConceptSuffix * 3.4.2.6 Race * 3.4.2.7 TaxonPlacement d54 5 a58 5 * 3.5.4.1 Assumptions * 3.5.4.1 SequenceType * 3.5.4.1 SymbolLength * 3.5.4.1 GapSymbol * 3.5.4.1 EnableAmbiguitySymbols d62 10 a71 10 * 3.8 TaxonHierarchies * 3.9.1 TaxonHierarchy elements * 3.9.1.1 [[SddScope][Scope]] * 3.9.1.2 TaxonHierarchyType * 3.9.1.3 [[SddNodes][Nodes]] * 3.9 CharacterHierarchies * 3.9.1 [[SddScope][Scope]] * 3.9.2 DesignedFor * 3.9.3 ShouldContainAllCharacters * 3.9.4 [[SddNodes][Nodes]] d73 11 a83 15 * 4 Miscellaneous * 4.1 CodedDescription * 4.2 [[SddMedia][Media]] * 4.3 [[SddMapping][Mapping]] * 4.4 SummaryData * 4.5 SampleData * 4.6 [[SddAgents][Agents]] * 4.7 DescriptiveTerminology * 4.8 DescriptiveConcepts * 4.9 [[SddPublications][Publications]] 2.4 Using SDD for raw observation data 6 FAQs @ 1.12 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1150856489" format="1.1" reprev="1.12" version="1.12"}% d74 9 a82 9 * 4.? CodedDescription * 4.? [[SddMedia][Media]] * 4.? [[SddMapping][Mapping]] * 4.? SummaryData * 4.? SampleData * 4.? [[SddAgents][Agents]] * 4.? DescriptiveTerminology * 4.? DescriptiveConcepts * 4.? [[SddPublications][Publications]] @ 1.11 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1150348119" format="1.1" version="1.11"}% d63 4 d68 4 d88 1 @ 1.10 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1150332508" format="1.1" version="1.10"}% d54 5 @ 1.9 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1150263689" format="1.1" reprev="1.9" version="1.9"}% d43 6 a48 6 * 3.4.2.1 Rank * 3.4.2.1 CanonicalName * 3.4.2.1 CanonicalAuthorship * 3.4.2.1 ConceptSuffix * 3.4.2.1 Race * 3.4.2.1 TaxonPlacement a74 1 @ 1.8 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149836766" format="1.1" version="1.8"}% d40 9 d75 1 @ 1.7 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149832923" format="1.1" reprev="1.7" version="1.7"}% d60 1 a63 1 a65 1 @ 1.6 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149817213" format="1.1" reprev="1.6" version="1.6"}% d37 1 a37 1 * 3.2 [[TechnicalMetadata][Technical metadata]] d48 2 a49 2 * 3.8 [[TaxonHierarchies][Taxon heirarchies]] * 3.9 [[CharacterHierarchies][Character heirarchies]] d57 3 a59 2 @ 1.5 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149729897" format="1.1" reprev="1.5" version="1.5"}% d53 10 a62 1 a55 1 d65 1 @ 1.4 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149643519" format="1.1" version="1.4"}% d18 1 d20 2 a21 1 * Box 2.1.1.2 - Example of raw (specimen) descriptive data d51 2 a53 2 4 Elements 5 Miscellaneous d56 1 @ 1.3 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149229169" format="1.1" version="1.3"}% d9 1 @ 1.2 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149146185" format="1.1" reprev="1.2" version="1.2"}% d36 1 a36 1 * 3.4 [[TaxonNames]][Defining taxon names]] a52 1 @ 1.1 log @@ text @d1 1 a1 1 %META:TOPICINFO{author="DonovanSharp" date="1149128657" format="1.1" reprev="1.1" version="1.1"}% d3 1 a3 1
d5 1 a5 7
SDD Part 0: Introduction and Primer to the SDD Standard |
Contents
1 Introduction
1.1 Background to the TDWG-SDD Subgroup
1.2 The nature of descriptive data in taxonomy
1.3 Goals of SDD
1.4 Basic structure of a simple SDD instance document
1.5 Beyond the simple instance...
d49 4
a52 47
2 Streams
2.1 Using SDD for coded data
2.1.1 What is coded data?
Box 2.1.1.1 - Simple examples of coded summary descriptions
Box 2.1.1.2 - Example of raw (specimen) descriptive
data
2.1.2 Elements of structured data in SDD
2.2 Using SDD for natural language descriptions
2.2.1 Traditional natural language descriptions
Box 2.2.1 - Typical natural language descriptions
2.2.2 Authored natural language descriptions
2.2.3 Marked up natural language descriptions
2.3 Using SDD for dichotomous keys
2.3.1 Traditional dichotomous keys
Box 2.3.1 - Typical dichotomous keys
2.3.2 SDD representation of dichotomous keys
2.3.3 Dichotomous keys using statements
2.3.4 Dichotomous keys using questions
2.3.5 Optional elements in SDD dichotomous keys
3 Basics
3.1 Datasets in SDD documents
3.2 Technical metadata
3.3 Dataset metadata
3.4 Defining taxon names
3.5 Characters
3.5.1 Categorical characters
3.5.2 Quantitative characters
3.5.3 Text characters
3.5.4 Sequence characters
3.5.5 Color range characters
3.6 SDD audiences
3.7 Language support in SDD
3.8 Taxon heirarchies
3.9 Character heirarchies
3.10 Dependencies in SDD
4 Elements
5 Miscellaneous
2.4 Using SDD for raw observation data
6 FAQs