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1.11
date 2007.02.13.14.55.45; author DonaldHobern; state Exp;
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date 2007.01.10.15.53.04; author RicardoPereira; state Exp;
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@%META:TOPICINFO{author="DonaldHobern" date="1171378545" format="1.1" reprev="1.11" version="1.11"}%
A ConceptNameServer should provide information about simple aliases for concepts and at a later stage also their relations between each other - especially list the unambiguos synonyms. This should probably be acompanied by a simple XML-RPC service to look up unambiguous synonyms.
This service should be based on one simple file which is always accessible by all services.
It defines the allowed globally unique concepts (fully qualified) and optionally an alias for them.
A service is free to use several CNS as long as they dont contradict. But is envisioned that each global community has a single CNS.
---+++ Use cases
The ConceptNameServer should offer services at least for the following cases:
*Browse ontology* - Find classes and the properties defined for each class
* This use case is of particular relevance for a provider configuration tool. The responses from this service should allow the configuration tool to prompt the user with properties which are available for mapping to the local data resource (including joins via _object properties_ to other ontology objects).
* Client provides an ontology identifier (class or property) and can retrieve associated definitions.
*Get mappings (output models) for class/property* - Find known (XML Schema) mappings including a given ontology class or property
* This use case allows a configuration tool to determine appropriate output models to offer for a given data resource (based on its mapping to the ontology). The tool can then offer the user a menu of output models which the resource could automatically be configured to provide.
* Client provides an ontology identifier (class or property) and receives a document listing available schema (and other?) representations with the mappings between their XPaths and ontology properties. Configuration tool adds selected output models to TAPIR configuration.
*Get mappings for schema* - Find classes and properties mapped to a particular (XML Schema) namespace
* This use case allows a consumer of data (potentially from sources not affiliated with this ConceptNameServer) to interpret data from an external schema as a set of ontology objects. This allows a ConceptNameServer-aware client to consume data provided by applications that are not ConceptNameServer-aware and to interpret these data in terms of the ConceptNameServer ontology.
* Client provides an (XML Schema) namespace string and receives a document with mappings between schema XPaths and ontology properties.
*Extend ontology* - Add classes and properties to the ontology
* User adds new classes to the ontology or defines properties for an existing class - need to consider authorisation and review processes.
*Register output model* - Map (XML Schema or other?) output model to ontology
* User defines mappings between output model XPaths and ontology properties - need to consider authorisation and review processes.
---+++ alias.txt
[[http://ww2.biocase.org/svn/tapir/trunk/protocol/alias.txt][download latest alias.txt]]
[concept_source]
label = ABCD v1.20
namespace = http://www.tdwg.org/schema/abcd/1.20
alias = abcd120
location = http://www.bgbm.org/TDWG/CODATA/Schema/ABCD-1.20.xsd
[models]
canonical = http://res.tdwg.org/tapir/models/ABCD-1.20.xml
[aliases]
SourceInstCode ConceptNameServerDataSets/DataSet/OriginalSource/SourceInstitutionCode
SourceName ConceptNameServerDataSets/DataSet/OriginalSource/SourceName
DateSupplied ConceptNameServerDataSets/DataSet/OriginalSource/SourceLastUpdatedDate
DateUpdated ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/DateSupplied
SupplierName ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/Person/PersonName
TermsOfUse ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/TermsOfUse
LegalOwnerOrganisation ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Organisation/OrganisationName
LegalOwnerPerson ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Person/PersonName
Disclaimer ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/Disclaimer
Logo ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/LogoURL
DatasetDescription ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Description
UnitID ConceptNameServerDataSets/DataSet/Units/Unit/UnitID
RecordBasis ConceptNameServerDataSets/DataSet/Units/Unit/RecordBasis
HigherTaxon ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/HigherTaxa/HigherTaxon
ScientificName ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/NameAuthorYearString
AuthorString ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/AuthorString
BotGenus ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/Genus
Identifier ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/Identifier/IdentifierPersonName/PersonName
IdentDate ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/IdentificationDate/ISODateTimeBegin
TypeStatus ConceptNameServerDataSets/DataSet/Units/Unit/UnitStateDomain/SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/TypeStatus
ImageURI ConceptNameServerDataSets/DataSet/Units/Unit/UnitDigitalImages/UnitDigitalImage/ImageURI
GatheringDate ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringDateTime/ISODateTimeBegin
Collector ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringAgents/GatheringAgent/Person/PersonName
Project ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/Project/ProjectTitle
Locality ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/LocalityText
Country ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Country/CountryName
Longitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
Latitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
Altitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Altitude/MeasurementAtomized/MeasurementLowerValue
Description ConceptNameServerDataSets/DataSet/Units/Unit/UnitDescription
%META:FILEATTACHMENT{name="alias.txt" attachment="alias.txt" attr="" comment="" date="1168444384" path="alias.txt" size="3891" stream="alias.txt" user="Main.RicardoPereira" version="1"}%
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%META:TOPICINFO{author="RicardoPereira" date="1168444384" format="1.1" version="1.10"}%
A ConceptNameServer should provide information about simple aliases for concepts and at a later stage also their relations between each other - especially list the unambiguos synonyms. This should probably be acompanied by a simple XML-RPC service to look up unambiguous synonyms.
This service should be based on one simple file which is always accessible by all services.
It defines the allowed globally unique concepts (fully qualified) and optionally an alias for them.
A service is free to use several CNS as long as they dont contradict. But is envisioned that each global community has a single CNS.
---+++ alias.txt
[[http://ww2.biocase.org/svn/tapir/trunk/protocol/alias.txt][download latest alias.txt]]
[concept_source]
label = ABCD v1.20
namespace = http://www.tdwg.org/schema/abcd/1.20
alias = abcd120
location = http://www.bgbm.org/TDWG/CODATA/Schema/ABCD-1.20.xsd
[models]
canonical = http://res.tdwg.org/tapir/models/ABCD-1.20.xml
[aliases]
SourceInstCode ConceptNameServerDataSets/DataSet/OriginalSource/SourceInstitutionCode
SourceName ConceptNameServerDataSets/DataSet/OriginalSource/SourceName
DateSupplied ConceptNameServerDataSets/DataSet/OriginalSource/SourceLastUpdatedDate
DateUpdated ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/DateSupplied
SupplierName ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/Person/PersonName
TermsOfUse ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/TermsOfUse
LegalOwnerOrganisation ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Organisation/OrganisationName
LegalOwnerPerson ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Person/PersonName
Disclaimer ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/Disclaimer
Logo ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/LogoURL
DatasetDescription ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Description
UnitID ConceptNameServerDataSets/DataSet/Units/Unit/UnitID
RecordBasis ConceptNameServerDataSets/DataSet/Units/Unit/RecordBasis
HigherTaxon ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/HigherTaxa/HigherTaxon
ScientificName ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/NameAuthorYearString
AuthorString ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/AuthorString
BotGenus ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/Genus
Identifier ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/Identifier/IdentifierPersonName/PersonName
IdentDate ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/IdentificationDate/ISODateTimeBegin
TypeStatus ConceptNameServerDataSets/DataSet/Units/Unit/UnitStateDomain/SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/TypeStatus
ImageURI ConceptNameServerDataSets/DataSet/Units/Unit/UnitDigitalImages/UnitDigitalImage/ImageURI
GatheringDate ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringDateTime/ISODateTimeBegin
Collector ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringAgents/GatheringAgent/Person/PersonName
Project ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/Project/ProjectTitle
Locality ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/LocalityText
Country ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Country/CountryName
Longitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
Latitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
Altitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Altitude/MeasurementAtomized/MeasurementLowerValue
Description ConceptNameServerDataSets/DataSet/Units/Unit/UnitDescription
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A ConceptNameServer should provide information about simple aliases for concepts and at a later stage also their relations between each other - especially list the unambiguos synonyms.
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[[attachment:alias.txt][download alias.txt]]
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For now we suggest to use a simple text file that is centrally accessible by all services which should look like this:
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SourceInstCode ConceptNameServerDataSets/DataSet/OriginalSource/SourceInstitutionCode
SourceName ConceptNameServerDataSets/DataSet/OriginalSource/SourceName
DateSupplied ConceptNameServerDataSets/DataSet/OriginalSource/SourceLastUpdatedDate
DateUpdated ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/DateSupplied
SupplierName ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/Person/PersonName
TermsOfUse ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/TermsOfUse
LegalOwnerOrganisation ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Organisation/OrganisationName
LegalOwnerPerson ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Person/PersonName
Disclaimer ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/Disclaimer
Logo ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/LogoURL
DatasetDescription ConceptNameServerDataSets/DataSet/DatasetDerivations/DatasetDerivation/Description
UnitID ConceptNameServerDataSets/DataSet/Units/Unit/UnitID
RecordBasis ConceptNameServerDataSets/DataSet/Units/Unit/RecordBasis
HigherTaxon ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/HigherTaxa/HigherTaxon
ScientificName ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/NameAuthorYearString
AuthorString ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/AuthorString
BotGenus ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/Genus
Identifier ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/Identifier/IdentifierPersonName/PersonName
IdentDate ConceptNameServerDataSets/DataSet/Units/Unit/Identifications/Identification/IdentificationDate/ISODateTimeBegin
TypeStatus ConceptNameServerDataSets/DataSet/Units/Unit/UnitStateDomain/SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/TypeStatus
ImageURI ConceptNameServerDataSets/DataSet/Units/Unit/UnitDigitalImages/UnitDigitalImage/ImageURI
GatheringDate ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringDateTime/ISODateTimeBegin
Collector ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringAgents/GatheringAgent/Person/PersonName
Project ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/Project/ProjectTitle
Locality ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/LocalityText
Country ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Country/CountryName
Longitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
Latitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
Altitude ConceptNameServerDataSets/DataSet/Units/Unit/Gathering/GatheringSite/Altitude/MeasurementAtomized/MeasurementLowerValue
Description ConceptNameServerDataSets/DataSet/Units/Unit/UnitDescription
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SourceInstitutionCode http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/OriginalSource/SourceInstitutionCode
SourceName http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/OriginalSource/SourceName
DateSupplied http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/OriginalSource/SourceLastUpdatedDate
DateUpdated http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/DateSupplied
PersonName http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/Person/PersonName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/Addresses/Address
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/TelephoneNumbers/TelephoneNumber/Number
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Supplier/EmailAddresses/EmailAddress
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/TermsOfUse
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Organisation/OrganisationName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Organisation/OrganisationCodes/OrganisationCode
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Person/PersonName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/Addresses/Address
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/TelephoneNumbers/TelephoneNumber/Number
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/EmailAddresses/EmailAddress
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/LegalOwner/URLs/URL
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/CopyrightDeclaration
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/IPRDeclaration
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Rights/RightsURL
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/Acknowledgement
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/Disclaimer
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Statements/LogoURL
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/DatasetDerivations/DatasetDerivation/Description
UnitID http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/UnitID
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/RecordBasis
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/HigherTaxa/HigherTaxon
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/NameAuthorYearString
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/AuthorString
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/Genus
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/FirstEpithet
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/SecondEpithet
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/TaxonIdentified/ScientificNameAtomized/Botanical/Rank
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/Identifier/IdentifierPersonName/PersonName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Identifications/Identification/IdentificationDate/ISODateTimeBegin
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/UnitStateDomain/SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/TypeStatus
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/UnitDigitalImages/UnitDigitalImage/ImageURI
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringDateTime/DateText
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringDateTime/ISODateTimeBegin
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringAgents/GatheringAgent/Person/PersonName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/Project/ProjectTitle
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/LocalityText
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/Country/CountryName
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/Altitude/MeasurementAtomized/MeasurementLowerValue
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/Altitude/MeasurementAtomized/MeasurementUpperValue
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/Gathering/GatheringSite/BiotopeData/BiotopeText
http://www.tdwg.org/schema/abcd/1.20#/DataSets/DataSet/Units/Unit/UnitDescription
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label = 'ABCD v1.20'
namespace = 'http://www.tdwg.org/schema/abcd/1.20'
ns_alias = 'abcd120'
location = 'http://www.bgbm.org/TDWG/CODATA/Schema/ABCD-1.20.xsd'
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