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1.1
date	2010.10.04.19.36.49;	author ArlinStoltzfus;	state Exp;
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1.1
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@4-taxon test case in phyloxml format
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@<?xml version="1.0" encoding="UTF-8"?>
<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
<phylogeny rooted="false">
  <clade>
    <clade>
      <branch_length>0.02428</branch_length>
      <confidence type="posterior probability">0.74</confidence>
      <clade>
        <branch_length>0.008307</branch_length>
        <taxonomy>
          <id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481174</id>
          <scientific_name>Mus musculus</scientific_name>
       </taxonomy>
       <sequence>
          <accession source="NCBI">CAA25899.1</accession>
          <name>Mus_musculus_CAA25899.1</name>
          <mol_seq>MGDVEKGKKIFVQKCAQCHT</mol_seq>
        </sequence>
      </clade>
      <clade>
        <branch_length>0.009662</branch_length>
        <taxonomy>
          <id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343</id>
          <scientific_name>Rattus norvegicus</scientific_name>
        </taxonomy>
        <sequence>
          <accession source="NCBI">AAA21711.1</accession>
          <name>Rattus_norvegicus_AAA21711.1</name>
          <mol_seq>MGDVEKGKKIFVQKCAQCHT</mol_seq>
        </sequence>
      </clade>
    </clade>
    <clade>
      <branch_length>0.040335</branch_length>
      <confidence type="unknown">0.69</confidence>
      <clade>
        <branch_length>0.055226</branch_length>
        <taxonomy>
          <id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:3854553</id>
          <scientific_name>Gallus gallus</scientific_name>
        </taxonomy>
        <sequence>
          <accession source="NCBI">CAA25046.1</accession>
          <name>Gallus_gallus_CAA25046.1</name>
          <mol_seq>MGDIEKGKKIFVQKCSQCHT</mol_seq>
        </sequence>
      </clade>
      <clade>
        <branch_length>0.117358</branch_length>
        <taxonomy>
          <id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343</id>
          <scientific_name>Rattus norvegicus</scientific_name>
        </taxonomy>
        <sequence>
          <accession source="NCBI">AAA41015.1</accession>
          <name>Rattus_norvegicus_AAA41015.1</name>
          <mol_seq>MGDAEAGKKIFIQKCAQCHT</mol_seq>
        </sequence>
      </clade>
    </clade>
  </clade>
</phylogeny>

</phyloxml>@