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@%META:TOPICINFO{author="MartinKalfatovic" date="1407871613" format="1.1" version="1.79"}%
---+!! Welcome to the Taxonomic Literature wiki web
This is a web-based collaboration area for discussions of the Taxonomic Literature Interest Group of the Biodiversity Information Standards (TDWG).
Click on Main.ThreeEasySteps if you're new to Wikis.
This wiki is open to anyone interested in the topic, but you must [[http://www.tdwg.org/membership/registration][register at the TDWG website]] to edit pages and add content.
---++Meeting of Literature Interest Group October 2014
The Literature Interest Group plans to meet at the 2014 TDWG Conference. Details soon!
---++Meeting of Literature Interest Group 14-16 November 2007
Where: In St Louis, Missouri _and_ around the world via video/phone/desktop conference
[[%ATTACHURL%/Agenda_TDWG_Lit_Group_6_Nov_07.doc][Agenda]]
[[%ATTACHURL%/tdwg_video.doc][Instructions for setting up and testing video conference facilities]] (thanks Arturo)
*Major agenda items*
Draft standard for high level literature content markup schema
Draft standard for Vocabulary & Content
Draft white paper (outline at least) for handling abbreviated and subreference citations
*Background documents*
*NEW REPLACEMENT* [[%ATTACHURL%/CitationVocabularyDraft_15Nov07_a.doc][Citation Vocabulary Draft as updated by group]] during afternoon session, 15 Nov 2007 -- Main.AnnaWeitzman - 16 Nov 2007
*NEW REPLACEMENT* [[%ATTACHURL%/Draft_Content_Structure_Tax_Lit.xls][Draft Literatue Content Structure]] with some Phrase suggestions as agreed to by group during morning session, 15 Nov 2007-- Main.AnnaWeitzman - 16 Nov 2007
*NEW* [[%ATTACHURL%/Lit_Schema_Comparison_update_15Nov07.xls][Revised preliminary high-level mapping]] of available schemas, with recommended high-level structure & some phrase-level elements, as created during the morning session on 15 Nov 2007; this will be turned into another form overnight and reposted -- [[AnnaWeitzman][Anna Weitzman]] - 15 Nov 2007
*NEW* [[%ATTACHURL%/CitationVocabularyDraft_14Nov07.doc][Citation Vocabulary Draft as created by group]] during afternoon session, 14 Nov 2007 -- [[AnnaWeitzman][Anna Weitzman]] - 15 Nov 2007
[[%ATTACHURL%/comparisonTaxonXtaXMLit22Oct07.pdf][High level comparison between TaxonX and taXMLit schemas]] (by [[AnnaWeitzman][Anna Weitzman]])
Partial first draft of Vocabulary: [[http://wiki.tdwg.org/twiki/bin/view/TAG/WhatIsTheOntology][About TDWG Ontology]] & [[http://wiki.tdwg.org/twiki/bin/view/TAG/PublicationCitationLsidVoc][Citation Vocabulary]] & [[http://wiki.tdwg.org/twiki/bin/view/TAG/LsidVocs][other Vocabularies to be used to create Publication Content Vocabulary]] (by [[RogerHyam][Roger Hyam]])
Comments on [[http://wiki.tdwg.org/twiki/bin/view/TAG/PublicationCitationLsidVoc][Vocabulary draft]] (discussion started by [[RichardPyle][Richard Pyle]] and continued by [[AnnaWeitzman][Anna Weitzman]])
[[%ATTACHURL%/Literature_Content_Standard_Criteria.xls][Preliminary document on use cases]] (based on INOTAXA use cases as presented in Bratislava-[[%ATTACHURL%/Parr_Lyal_use_case_presentation_compressed.pdf][Use cases from taxonomists, conservationists, and others]]) and requirements for content schema for Literature (by [[AnnaWeitzman][Anna Weitzman]] & [[ChrisLyal][Chris Lyal]])
[[%ATTACHURL%/Lit_Schema_Comparison.xls][Preliminary high-level mapping of available schemas]] (or data dictionaries) by [[AnnaWeitzman][Anna Weitzman]]. Source documents used available below.
First draft outline for white paper on best practices for citations and marking them (by [[DavidRemsen][David Remsen]], coming soon)
---++Literature at TDWG 2007 in Bratislava, Slovakia, September
*[[%ATTACHURL%/TDWG_Literature_meeting__Bratislava.doc][Minutes from meeting of Literature Interest Group]]*
*Talks from Session on Literature*:
Session 8: Models for Integrating TDWG: Literature Model
[[%ATTACHURL%/Weitzman_Models_for_Integrating_TDWG_Literature.pdf][Introduction]] ([[AnnaWeitzman][Anna Weitzman]])
[[%ATTACHURL%/Welby_TDWG_2007_presentation.pdf][Linking Bibliographic Data to Library Content]] ([[JuliusWelby][Julius Welby]])
[[%ATTACHURL%/Parr_Lyal_use_case_presentation_compressed.pdf][Use cases from taxonomists, conservationists, and others]] (Cynthia Sims Parr & [[ChrisLyal][Chris Lyal]])
[[%ATTACHURL%/Catapano_Weitzman_Markup_Final.pdf][Progress in making literature easily accessible: schemas and marking up]] ([[TerryCatapano][Terry Catapano]] & [[AnnaWeitzman][Anna Weitzman]])
[[%ATTACHURL%/Agosti_Tdwg_literature_interoperability.ppt][Literature & interoperability: a working example using Ants]] ([[DonatAgosti][Donat Agosti]], [[TerryCatapano][Terry Catapano]]& [[GuidoSautter][Guido Sautter]])
[[%ATTACHURL%/Weitzman_Lyal_Models_for_Integrating_TDWG_Summary.pdf][ (Taxonomic Literature: What Next?]] ([[AnnaWeitzman][Anna Weitzman]] & [[ChrisLyal][Chris Lyal]])
---++ Comparisons of existing solutions
Go to ComparisonOfExistingSolutions to literature markup for discussion based on the TDWG2006 presentation by [[AnnaWeitzman][Anna Weitzman]] & [[ChrisLyal][Chris Lyal]]
* Some additional literature standards efforts
* http://wwwsearch.sourceforge.net/bib/openbib.html
* http://esw.w3.org/topic/HCLS/HCLSIG_BibliographicInformation
---
Notes for WIKI newcomers:
* Click on Main.ThreeEasySteps if you're new to Wikis. [[http://www.tdwg.org/membership/registration][register at the TDWG website]] if you want to contribute.
* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[BDI.SDD_][TDWG BDI.SDD_ WebHome]]
* Want automatic email notifications when a topic is modified? Simply edit WebNotify to add the wiki name you registered.
---
---++ %WEB% Web Utilities
* [[%ATTACHURL%/Agenda_TDWG_Lit_Group_6_Nov_07.doc][Agenda_TDWG_Lit_Group_6_Nov_07.doc]]: Agenda for Lit Group meeting 14-16 Nov 2007
* [[%ATTACHURL%/tdwg_video.doc][tdwg_video.doc]]: Description and instructions for video connections to meeting by Arturo Arino
* [[%ATTACHURL%/TDWG_Literature_meeting__Bratislava.doc][TDWG_Literature_meeting__Bratislava.doc]]: Minutes from Literature Group in Bratislava, Sept 2007
* [[%ATTACHURL%/comparisonTaxonXtaXMLit22Oct07.pdf][comparisonTaxonXtaXMLit22Oct07.pdf]]: Diagram comparing TaxonX and taXMLit at a high level
* [[%ATTACHURL%/Agosti_Tdwg_literature_interoperability.ppt][Agosti_Tdwg_literature_interoperability.ppt]]: Agosti & Catapano 2007
* [[%ATTACHURL%/Catapano_Weitzman_Markup_Final.pdf][Catapano_Weitzman_Markup_Final.pdf]]: Catapano & Weitzman 2007
* [[%ATTACHURL%/Parr_Lyal_use_case_presentation_compressed.pdf][Parr_Lyal_use_case_presentation_compressed.pdf]]: Parr & Lyal 2007
* [[%ATTACHURL%/Weitzman_Lyal_Models_for_Integrating_TDWG_Summary.pdf][Weitzman_Lyal_Models_for_Integrating_TDWG_Summary.pdf]]: Weitzman & Lyal 2007
* [[%ATTACHURL%/Weitzman_Models_for_Integrating_TDWG_Literature.pdf][Weitzman_Models_for_Integrating_TDWG_Literature.pdf]]: Weitzman 2007
* [[%ATTACHURL%/Welby_TDWG_2007_presentation.pdf][Welby_TDWG_2007_presentation.pdf]]: Welby 2007
* [[%ATTACHURL%/Literature_Content_Standard_Criteria.xls][Literature_Content_Standard_Criteria.xls]]: Literature_Content_Standard_Criteria.xls
* [[%ATTACHURL%/Lit_Schema_Comparison.xls][Lit_Schema_Comparison.xls]]: Lit_Schema_Comparison.xls
* [[%ATTACHURL%/taXMLit_v3-016e.xsd][taXMLit_v3-016e.xsd]]: taXMLit current version November 2007
* [[%ATTACHURL%/African_Floras_data_dictionary.doc][African_Floras_data_dictionary.doc]]: Kew's Data Dictionary for African Floras, Nov 2007
* [[%ATTACHURL%/fl-australia.xsd][fl-australia.xsd]]: Australian Floras Schema, downloaded Nov 2007
* [[%ATTACHURL%/TaxonomicPublication.xsd][TaxonomicPublication.xsd]]: NZ Floras schema, received Oct 2004
* [[%ATTACHURL%/Fl_Bras_Data_Dict.doc][Fl_Bras_Data_Dict.doc]]: Flora Brasiliensis Data Dictionary from Report July 2006
* [[%ATTACHURL%/taxonx1.xsd][taxonx1.xsd]]: TaxonX schema, downloaded Sept 2007
* [[%ATTACHURL%/CitationVocabularyDraft_14Nov07.doc][CitationVocabularyDraft_14Nov07.doc]]: Citation Vocabulary Draft created during afternoon session, 14 Nov 2007
* [[%ATTACHURL%/Draft_Content_Structure_Tax_Lit.xls][Draft_Content_Structure_Tax_Lit.xls]]: Draft Literatue Content Structure and with some Phrase suggestions 15 Nov 2007
* [[%ATTACHURL%/CitationVocabularyDraft_15Nov07_a.doc][CitationVocabularyDraft_15Nov07_a.doc]]: Citation Vocabulary drafted by group updated late 15 Nov 2007
* [[%ATTACHURL%/taXMLit_v3-017a-15Jan08.xsd][taXMLit_v3-017a-15Jan08.xsd]]: Current version of taXMLit schema, 15 January 2008
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%META:FILEATTACHMENT{name="fl-australia.xsd" attachment="fl-australia.xsd" attr="" comment="Australian Floras Schema, downloaded Nov 2007" date="1194972487" path="C:\AnnaAll\bioinformatics collabMar07\Lit standards\australianfloraxml\fl-australia.xsd" size="20082" stream="C:\AnnaAll\bioinformatics collabMar07\Lit standards\australianfloraxml\fl-australia.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="TaxonomicPublication.xsd" attachment="TaxonomicPublication.xsd" attr="" comment="NZ Floras schema, received Oct 2004" date="1194972578" path="C:\AnnaAll\bioinformatics collabMar07\Lit standards\NZFlora\TaxonomicPublication.xsd" size="87547" stream="C:\AnnaAll\bioinformatics collabMar07\Lit standards\NZFlora\TaxonomicPublication.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="Fl_Bras_Data_Dict.doc" attachment="Fl_Bras_Data_Dict.doc" attr="" comment="Flora Brasiliensis Data Dictionary from Report July 2006" date="1194972780" path="C:\AnnaAll\bioinformatics collabMar07\Lit standards\Fl_Bras_Data_Dict.doc" size="28672" stream="C:\AnnaAll\bioinformatics collabMar07\Lit standards\Fl_Bras_Data_Dict.doc" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="taxonx1.xsd" attachment="taxonx1.xsd" attr="" comment="TaxonX schema, downloaded Sept 2007" date="1194972852" path="C:\AnnaAll\TDWG 2007\LitGroup\taxonx1.xsd" size="21135" stream="C:\AnnaAll\TDWG 2007\LitGroup\taxonx1.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="Lit_Schema_Comparison_update_15Nov07.xls" attachment="Lit_Schema_Comparison_update_15Nov07.xls" attr="" comment="Updated comparison of schemas created during meeting 15 Nov 2007" date="1195149913" path="C:\Documents and Settings\mwestmoreland\Desktop\Lit_Schema_Comparison_update 15Nov07.xls" size="23040" stream="C:\Documents and Settings\mwestmoreland\Desktop\Lit_Schema_Comparison_update 15Nov07.xls" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="CitationVocabularyDraft_14Nov07.doc" attachment="CitationVocabularyDraft_14Nov07.doc" attr="" comment="Citation Vocabulary Draft created during afternoon session, 14 Nov 2007" date="1195150417" path="C:\Documents and Settings\mwestmoreland\Desktop\CitationVocabularyDraft_14Nov07.doc" size="38912" stream="C:\Documents and Settings\mwestmoreland\Desktop\CitationVocabularyDraft_14Nov07.doc" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="Draft_Content_Structure_Tax_Lit.xls" attachment="Draft_Content_Structure_Tax_Lit.xls" attr="" comment="Draft Literatue Content Structure and with some Phrase suggestions 15 Nov 2007" date="1195186822" path="C:\Documents and Settings\Anna\Desktop\Draft_Content_Structure_Tax_Lit.xls" size="20992" stream="C:\Documents and Settings\Anna\Desktop\Draft_Content_Structure_Tax_Lit.xls" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="CitationVocabularyDraft_15Nov07_a.doc" attachment="CitationVocabularyDraft_15Nov07_a.doc" attr="" comment="Citation Vocabulary drafted by group updated late 15 Nov 2007" date="1195186891" path="C:\Documents and Settings\Anna\Desktop\CitationVocabularyDraft_15Nov07_a.doc" size="78848" stream="C:\Documents and Settings\Anna\Desktop\CitationVocabularyDraft_15Nov07_a.doc" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="taXMLit_v3-017a-15Jan08.xsd" attachment="taXMLit_v3-017a-15Jan08.xsd" attr="" comment="Current version of taXMLit schema, 15 January 2008" date="1201616134" path="C:\AnnaAll\INOTAXAMar07\taXMLit\current_after_disk_loss\taXMLit_v3-017a-15Jan08.xsd" size="568374" stream="C:\AnnaAll\INOTAXAMar07\taXMLit\current_after_disk_loss\taXMLit_v3-017a-15Jan08.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="taXMLit_v4-04.xsd" attachment="taXMLit_v4-04.xsd" attr="" comment="taXMLit Current version March 2010" date="1269004609" path="taXMLit_v4-04.xsd" size="683466" stream="taXMLit_v4-04.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="taXMLit_v5-04.xsd" attachment="taXMLit_v5-04.xsd" attr="" comment="Up-to-date version of taXMLit, 5 October 2011" date="1317827260" path="taXMLit_v5-04.xsd" size="603161" stream="taXMLit_v5-04.xsd" user="Main.AnnaWeitzman" version="1"}%
%META:FILEATTACHMENT{name="taXMLite_v5-04.xsd" attachment="taXMLite_v5-04.xsd" attr="" comment="Up-to-date version of taXMLite, a lighter version of taXMLit, 5 October 2011" date="1317828670" path="taXMLite_v5-04.xsd" size="548482" stream="taXMLite_v5-04.xsd" user="Main.AnnaWeitzman" version="2"}%
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%META:FILEATTACHMENT{name="taXMLit_v3-016e.xsd" attachment="taXMLit_v3-016e.xsd" attr="" comment="taXMLit current version November 2007" date="1194972286" path="C:\AnnaAll\INOTAXAMar07\taXMLit\current_after_disk_loss\taXMLit_v3-016e.xsd" size="510077" stream="C:\AnnaAll\INOTAXAMar07\taXMLit\current_after_disk_loss\taXMLit_v3-016e.xsd" user="Main.AnnaWeitzman" version="1"}%
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%META:TOPICINFO{author="LeeBelbin" date="1258685134" format="1.1" reprev="1.75" version="1.75"}%
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* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[BDI.SDD][TDWG BDI.SDD WebHome]]
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%META:TOPICINFO{author="AnnaWeitzman" date="1201616136" format="1.1" version="1.74"}%
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* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[SDD.WebHome][TDWG SDD WebHome]]
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%META:TOPICINFO{author="ChrisFreeland" date="1195246141" format="1.1" version="1.73"}%
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%META:TOPICINFO{author="AnnaWeitzman" date="1195187133" format="1.1" reprev="1.71" version="1.71"}%
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---++Meeting of Lterature Interest Group 14-16 November 2007
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*NEW*
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%META:TOPICINFO{author="RichardPyle" date="1194944961" format="1.1" version="1.68"}%
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[[%ATTACHURL%/comparisonTaxonXtaXMLit22Oct07.pdf][High level comparison between TaxonX and taXMLit schemas]] (by Anna Weitzman)
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Partial first draft of Vocabulary: [[http://wiki.tdwg.org/twiki/bin/view/TAG/WhatIsTheOntology][About TDWG Ontology]] & [[http://wiki.tdwg.org/twiki/bin/view/TAG/PublicationCitationLsidVoc][Citation Vocabulary]] & [[http://wiki.tdwg.org/twiki/bin/view/TAG/LsidVocs][other Vocabularies to be used to create Publication Content Vocabulary]] (by Roger Hyam)
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Comments on [[http://wiki.tdwg.org/twiki/bin/view/TAG/PublicationCitationLsidVoc][Vocabulary draft]] (discussion started by [[RichardPyle][Richard Pyle]])
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First draft outline for white paper (by David Remsen, coming soon)
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[[%ATTACHURL%/Weitzman_Models_for_Integrating_TDWG_Literature.pdf][Introduction]] (Anna Weitzman)
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[[%ATTACHURL%/Welby_TDWG_2007_presentation.pdf][Linking Bibliographic Data to Library Content]] (Julius Welby)
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[[%ATTACHURL%/Parr_Lyal_use_case_presentation_compressed.pdf][Use cases from taxonomists, conservationists, and others]] (Cynthia Sims Parr & Christopher Lyal)
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[[%ATTACHURL%/Catapano_Weitzman_Markup_Final.pdf][Progress in making literature easily accessible: schemas and marking up]] (Terry Catapano & Anna Weitzman)
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[[%ATTACHURL%/Agosti_Tdwg_literature_interoperability.ppt][Literature & interoperability: a working example using Ants]] (Donat Agosti, Terry Catapano & Guido Sautter)
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[[%ATTACHURL%/Weitzman_Lyal_Models_for_Integrating_TDWG_Summary.pdf][ (Taxonomic Literature: What Next?]] (Anna Weitzman & Christopher Lyal)
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Go to ComparisonOfExistingSolutions to literature markup for discussion based on the TDWG2006 presentation by AnnaWeitzman & Chris Lyal
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%META:TOPICINFO{author="AnnaWeitzman" date="1194388500" format="1.1" version="1.66"}%
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Meeting of Lterature Interest Group 14-16 November 2007
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Agenda (coming soon)
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Instructions for setting up and testing video conference facilities (thanks Arturo) (coming soon)
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Background documents (coming soon)
High level comparison between TaxonX and taXMLit schemas (by Anna Weitzman)
First draft of Vocabulary (by Roger Hyam)
Comments on Vocabulary draft (by Rich Pyle)
First draft outline for white paper (by David Remsen)
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Talks from 2007 TDWG Session on Literature Standards (coming soon)
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%META:TOPICINFO{author="RicardoPereira" date="1192718195" format="1.1" reprev="1.65" version="1.65"}%
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Go to ComparisonOfExistingSolutions to literature markup for discussion based on the TDWG2006 presentation by AnnaWeitzmann
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---++ Principal Divisions
* TaxLitStdLevel1:
* Single string
* LSID or GUID + human readable string with elements of a microreference (citation)
* * TaxLitStdLevel2: *
* Gutenberg Core
* LSID or GUID
* elements to describe reference (MODS based)
* elements to describe microreference (citation)
* elements to describe full bibliographic citation
* format/elements/functions necessary to build a taxonomic literature
* database (central or distributed?; based on existing resources) for use
* * TaxLitSdLevel3: *
* complete taxonomic literature content schema using taXMLit and other existing efforts as a starting point
* standard to work with existing literature recommendations (within standard?) for future literature (interest already expressed from publishing community)
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%META:TOPICINFO{author="BryanHeidorn" date="1187286950" format="1.1" version="1.64"}%
---++ Impatient? Learn how to use the TWiki in Main.ThreeEasySteps.
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Welcome to the home of %WIKITOOLNAME%.%WEB%.This is a web-based collaboration area for discussions of the Taxonomic Literature Standards group of the Taxonomic Data Working Group. Click on TWiki.WebHome if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an topic is modified? Simply edit the topic WebNotify to add the wiki name you registered.
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* Click on Main.ThreeEasySteps if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers).
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%INCLUDE{"%TWIKIWEB%.YouAreHere"}%
You are welcome to visit the [[http://umb.edu/ University of Massachusetts at Boston]] and the [[http://efg.cs.umb.edu/ Electronic Field Guide]] project which provides the wiki infrastructure (in addition to participating ín the discussions)!
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Welcome to the home of %WIKITOOLNAME%.%WEB%.This is a web-based collaboration area for discussions of the Taxonomic Literature Standards group of the Taxonomic Data Working Group. Click on TWiki.WebHome if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered.
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* TaxLitStdLevel1:
* Single string
* LSID or GUID + human readable string with elements of a microreference (citation)
* * TaxLitStdLevel2: *
* Gutenberg Core
* LSID or GUID
* elements to describe reference (MODS based)
* elements to describe microreference (citation)
* elements to describe full bibliographic citation
* format/elements/functions necessary to build a taxonomic literature
* database (central or distributed?; based on existing resources) for use
* * TaxLitSdLevel3: *
* complete taxonomic literature content schema using taXMLit and other existing efforts as a starting point
* standard to work with existing literature recommendations (within standard?) for future literature (interest already expressed from publishing community)
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* Click on Main.ThreeEasySteps if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers).
* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[SDD.WebHome][TDWG SDD WebHome]]
* Want automatic email notifications when a topic is modified? Simply edit WebNotify to add the wiki name you registered.
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Site Tools:
%INCLUDE{"%TWIKIWEB%.WebSiteTools"}%
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Welcome to the home of %WIKITOOLNAME%.%WEB%.This is a web-based collaboration area for discussions of the Image Interest Group interest group of the Taxonomic Data Working Group. Click on TWiki.WebHome if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered. Want
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---+++TDWGImage Topics
* Will be here shortly
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* Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers).
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%META:TOPICINFO{author="GregorHagedorn" date="1108737159" format="1.0" version="1.58"}%
Welcome to the home of the SDD WIKI! This is a web-based collaboration area for discussions of the subgroup on the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data]] of the Taxonomic Data Working Group. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered.
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New to SDD? Start at Overview of Available Documentation (1.0) ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored). Also see the
SDD Tutorial/Primer !! but take care that its present draft refers to an early schema version. Many element names have changed, and some of the global structure has, but you will still be able to understand the purpose and philosophy of the SDD schema!!
TDWG 2004, Christchurch, NZ: The Minutes of the 2 day++ meeting in Christchurch, New Zealand, 11-17. October 2004 (TDWG 2004) are available . This is a preliminary version, comments/additions are most welcome!. No new post-Christchurch schema is available yet, the discussion schema used in Christchurch can still be found here: SDD 1.0 beta 2.
---
---+++SDD Topics
* SddPrimer - please contribute to this - the Primer will be authored collaboratively on this wiki
* [[http://160.45.63.11/Projects/TDWG-SDD/index.html][SDD non-WIKI web site with news]]
* SchemaDiscussion (main topic, currently referring to SDD 1.0)
* An up-to-date version of the schema should always be in CurrentSchemaVersion!
* Overview of Available Documentation (1.0) ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored).
* Beginnings of the SDD Tutorial/Primer ([[Main.KevinThiele][Kevin Thiele]])
* MeetingMinutes (rich discussion content rather than formal minutes!)
* ToolsForSDD
* IssuesInThePrimer
* ImplementationsOfSDD
* SDDBioLinkDiscussion
* SDDAsNativeStore Issues about querying and other XML database issues arising when SDD is the underlying data representation.
* [[http://160.45.63.11/Projects/TDWG-SDD/Docs/SDD_P_Data_SpecialStates.html][SDD Coding Status]]
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* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[SPECIESid.WebHome][Species Identification WebHome]].
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* Topic name conventions: topics renamed to ResolvedTopic... or ClosedTopic... are still valuable to read, but old and not relevant to ongoing discussions. Topics renamed to ZZZObsolete are resolved or closed topics that I consider no longer intelligable based on the current version of the schema. -- Gregor
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Many thanks to Bob Morris of the [[http://umb.edu/ University of Massachusetts at Boston]] and the [[http://www.cs.umb.edu/~alyons/efg_web/ Electronic Field Guide]] project for providing the wiki infrastructure (in addition to participating ín the discussions)!
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Meeting in Christchurch, NZ, TDWG October 2004: On Tuesday or Wednesday a public SDD review will be held. The results and further input will be discussed at a three day meeting on Saturday 16/Sunday 17/Monday 18! Please see the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][SDD non-WIKI web site]] for links and news,
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Meeting in Berlin (May 2004): Many thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! Naturally we achieved only some progress and it is very important that we continue the discussion. A first version of the minutes of the meeting is out. The main topics that urgently need discussion can be found under
* UBIF UBIF.SchemaDiscussion (UBIF = Unified Biosciences Information Framework = what should be common to ABCD, SDD, TCS, etc.?), and
* SDD SchemaDiscussion
---
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* ToolsForUseWithSDD
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---
testing updates against r1.52; ignore
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* SDDPrimer.SddPrimer - please contribute to this - the Primer will be authored collaboratively on this wiki
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* SddPrimer - please contribute to this - the Primer will be authored collaboratively on this wiki
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%META:TOPICINFO{author="BenRichardson" date="1097977566" format="1.0" version="1.52"}%
Welcome to the home of the SDD WIKI! This is a web-based collaboration area for discussions of the subgroup on the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data]] of the Taxonomic Data Working Group. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered.
New to SDD? Start at Overview of Available Documentation (1.0) ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored). Also see the
SDD Tutorial/Primer !! but take care that its present draft refers to an early schema version. Many element names have changed, and some of the global structure has, but you will still be able to understand the purpose and philosophy of the SDD schema!!
Meeting in Christchurch, NZ, TDWG October 2004: On Tuesday or Wednesday a public SDD review will be held. The results and further input will be discussed at a three day meeting on Saturday 16/Sunday 17/Monday 18! Please see the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][SDD non-WIKI web site]] for links and news,
---
Meeting in Berlin (May 2004): Many thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! Naturally we achieved only some progress and it is very important that we continue the discussion. A first version of the minutes of the meeting is out. The main topics that urgently need discussion can be found under
* UBIF UBIF.SchemaDiscussion (UBIF = Unified Biosciences Information Framework = what should be common to ABCD, SDD, TCS, etc.?), and
* SDD SchemaDiscussion
---
---+++SDD Topics
* SddPrimer - please contribute to this - the Primer will be authored collaboratively on this wiki
* [[http://160.45.63.11/Projects/TDWG-SDD/index.html][SDD non-WIKI web site with news]]
* SchemaDiscussion (main topic, currently referring to SDD 1.0)
* An up-to-date version of the schema should always be in CurrentSchemaVersion!
* Overview of Available Documentation (1.0) ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored).
* Beginnings of the SDD Tutorial/Primer ([[Main.KevinThiele][Kevin Thiele]])
* MeetingMinutes (rich discussion content rather than formal minutes!)
* ToolsForUseWithSDD
* IssuesInThePrimer
* ImplementationsOfSDD
* SDDBioLinkDiscussion
* SDDAsNativeStore Issues about querying and other XML database issues arising when SDD is the underlying data representation.
* [[http://160.45.63.11/Projects/TDWG-SDD/Docs/SDD_P_Data_SpecialStates.html][SDD Coding Status]]
---
Notes for WIKI newcomers:
* Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers).
* To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of this Wiki Web might be the [[UBIF.WebHome][Unified Biosciences Information Framework (UBIF) WebHome]] and the [[SPECIESid.WebHome][Species Identification WebHome]].
* Want automatic email notifications when a topic is modified? Simply edit WebNotify to add the wiki name you registered.
* Topic name conventions: topics renamed to ResolvedTopic... or ClosedTopic... are still valuable to read, but old and not relevant to ongoing discussions. Topics renamed to ZZZObsolete are resolved or closed topics that I consider no longer intelligable based on the current version of the schema. -- Gregor
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* UBIF SchemaDiscussion (UBIF = Unified Biosciences Information Framework = what should be common to ABCD, SDD, TCS, etc.?), and
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* UBIF SchemaDiscussion (UBIF = Unified Biosciences Information Framework = what should be common to ABCD, SDD, TaxonNames, etc.?), and
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%RED% New to SDD?%ENDCOLOR% Start at Overview of Available Documentation ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored). Especially see the
SDD Tutorial/Primer but take care that its present draft refers to an early schema version. Many element names have changed, and some of the global structure has, but you will still be able to understand the purpose and philosophy of the SDD schema.
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Meeting in Berlin (May 2004): Many thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! Naturally we achieved only some progress and it is very important that we continue the discussion. A first version of the minutes of the meeting is out. The main topics that urgently need discussion can be found under
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* Overview of Available Documentation ([[Main.GregorHagedorn][Gregor Hagedorn]]) providing technical documentation of the schema (complete autogenerated plus partially authored).
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* [[http://160.45.63.11/Projects/TDWG-SDD/index.html][SDD web site (main site, outside the WIKI)]]
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Notes:
* Topic names: topics renamed to ResolvedTopic... or ClosedTopic... are still valuable to read, but old and not relevant to ongoing discussions. Topics renamed to ZZZObsolete are resolved or closed topics that I consider no longer intelligable based on the current version of the schema. -- Gregor
%INCLUDE{"%TWIKIWEB%.YouAreHere"}% To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of the SDD Wiki Web might be the [[SPECIESid.WebHome][Species Identification WebHome]].
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* UnifiedBioInfoFramework (= what should be common to ABCD, SDD, TaxonNames, etc.? This will probably be moved to a new WIKI web soon, but all content will be transferred!), and
* SchemaDiscussion
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Meeting in Berlin (May 2004): Many thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! Naturally we achieved only some progress and it is very important that we continue the discussion. A first version of the minutes of the meeting is out. The following is a short list of Berlin-related topics available here on the SDD WIKI:
* UnifiedBioInfoFramework = what should be common to ABCD, SDD, TaxonNames, etc.? See also topics: TopLevelStructure, DerivationHistory, ProxyDataModel.
* GeneralDeclarations = we all agree that these could be defined externally, but how?
* Still relevant: ModularizationOfSchema, ExternalTerminology, FederatingDescriptions
* Also, there should always be an up-to-date version of the schema in CurrentSchemaVersion!
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I am currently going through previous topics to try to sort out anything I can myself and get the unsolved things back to the surface again (see the note at the bottom for my strategy of renaming topics). -- Some important earlier, but still unresolved topics regarding the core of descriptive data (i.e. not overarching issues) that I would need a discussion on:
* ListOfTextCharacter
* SecondaryClassifiersWithinClasses
* StateMapping
* RepeatedObservations
* StateAndStatisticalMeasureBothPermitted, StatisticalMeasureReuse
* LocalModifiers
* NameForStandard
---
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* SchemaDiscussion (currently referring to [[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_Core.xsd Release 0.9]], 1. Dec. 2003)
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Many thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! Naturally we achieved only some progress and it is very important that we continue the discussion. It will take some time to prepare full minutes of the meeting, but I suggest to have a short list of Berlin-related topics here at the starting page:
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* [[SDD2004Berlin][Agenda for review meeting in Berlin]]
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* OverarchingPatternsForTdwgSchemata = what should be common to ABCD, SDD, TaxonNames, etc.? See also topics: TopLevelStructure, DerivationHistory, ProxyDataModel.
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---++SDD Topics
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Notes on topic names: topics renamed to ResolvedTopic... or ClosedTopic... are still valuable to read, but old and not relevant to ongoing discussions. Topics renamed to ZZZObsolete are resolved or closed topics that I consider no longer intelligable based on the current version of the schema. -- Gregor
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* OverarchingPatternsForTdwgSchemata = what should be common to ABCD, SDD, TaxonNames, etc.? See also topics: DerivationHistory, ResolvedTopicDatasetCapitalization.
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* Still relevant: ModularizationOfSchema
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Some important earlier, but still unresolved topics regarding the core of descriptive data (i.e. not overarching issues) that I would need a discussion on:
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* StateAndStatisticalMeasureBothPermitted
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* Also, I will attempt to provide an up-to-date version of the schema in CurrentSchemaVersion!
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* OverarchingPatternsForTdwgSchemata = what should be common to ABCD, SDD, TaxonNames, etc.? See also topics: DerivationHistory, DatasetCapitalization.
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Thanks to everybody who participated in the [[SDD2004Berlin][Berlin Meeting]]! It was a very important meeting. It will take some time to prepare full minutes of the meeting, but I suggest to have a short list of Berlin-related topics here at the starting page:
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* [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data web site]]
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* OverarchingPatternsForTdwgSchemata = what should be common to ABCD, SDD, TaxonNames, etc.?
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Welcome to the home of the SDD WIKI!
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%RED% If you are attending the [[SDD2004Berlin][Berlin Meeting]] please be sure to add your name to SDD.WebNotify once you have a wiki name. If you are suddenly getting automatic notification, it's because I added your name to SDD.WebNotify because I think your input may be particularly valuable for the [[SDD2004Berlin][Berlin Meeting]], whether you are attending or not. If this addition is an unwelcome intrusion, please simply edit SDD.WebNotify to remove your name and accept my apologies. -- Main.BobMorris - 24 Apr 2004 %ENDCOLOR%
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This is a web-based collaboration area for discussions of the subgroup on the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data]] of the Taxonomic Data Working Group. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute (see Main.TWikiUsers for a list of subscribers). Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered.
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---++Topics
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* [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data web site]]
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Welcome to the home of %WIKITOOLNAME%.%WEB%!
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%RED% If you are attending the [[SDD2004Berlin][Berlin Meeting]] please be sure to add your name to SDD.WebNotify once you have a wiki name.
If you are suddenly getting automatic notification, it's because I added your name to SDD.WebNotify because I think your input may be particularly valuable for the [[SDD2004Berlin][Berlin Meeting]], whether you are attending or not. If this addition is an unwelcome intrusion, please simply edit SDD.WebNotify to remove your name and accept my apologies. -- Main.BobMorris - 24 Apr 2004 %ENDCOLOR%
This is a web-based collaboration area for discussion of the subgroup on the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data]] of the Taxonomic Data Working Group. Click on one of the topics below to enter the Wiki. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute. Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered. Visit Main.TWikiUsers for a list of subscribers.
[[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_Core.xsd Release 0.9]] was made on December 1, 2003. The beginning of [[Main.KevinThiele][Kevin Thiele's]] SDD Tutorial is released, as is [[Main.GregorHagedorn][Gregor Hagedorn's]] Overview of Available Documentation which has extensive technical documentation.
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* SchemaDiscussion (currently referring to SDD 0.9, 1. Dec. 2003)
* MeetingMinutes
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[[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_Core.xsd Release 0.9]] was made on December 1, 2003. The beginning of [[Main.KevinThiele][Kevin Thiele's]] [[http://160.45.63.11/Projects/TDWG-SDD/Primer/index.htm SDD Tutorial]] is released, as is [[Main.GregorHagedorn][Gregor Hagedorn's]] [[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_DocuOverview.html Overview of Available Documentation]] which has extensive technical documentation.
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---+++ Notes:
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---+++ Site Tools of the %WEB% Web
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[[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_Core.xsd Release 0.9]] was made on December 1, 2003. The beginning of [[Main.KevinThiele][Kevin Thiele's]] [[http://160.45.63.11/Projects/TDWG-SDD/Primer/index.htm SDD Tutorial]] is released, as is
[[Main.GregorHagedorn][Gregor Hagedorn's]] [[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_DocuOverview.html Overview of Available Documentation]] which has extensive technical documentation.
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* SchemaDiscussion (currently referring to SDD 0.9, 1. Dec. 2003)
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* [[SDD2004Berlin][Agenda for review meeting in Berlin]]
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[[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_Core.xsd Release 0.9]] was made on December 1, 2003. The beginning of Main.KevinThiele's [[http://160.45.63.11/Projects/TDWG-SDD/Primer/index.htm SDD Tutorial]] is released, as is Main.GregorHagedorn's [[http://160.45.63.11/Projects/TDWG-SDD/Minutes/2003Lisbon_schema/SDD_09_DocuOverview.html Overview of Available Documentation]] which has extensive technical documentation.
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%X% Quite a few technical changes were made at the Lisbon TDWG meeting, and several technical decisions were made but not yet implemented. We committed to a beta release on December 1 that completes those implementations and a draft of a tutorial by Main.KevinThiele. Consequently, _many_ topics here are obsolete and you are urged to browse but perhaps not edit them. Before December 1, we'll try to indicate which topics are completely obsolete. -- Main.BobMorris - 28 Oct 2003
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Welcome to the home of %WIKITOOLNAME%.%WEB%. This is a web-based collaboration area for discussion of the subgroup on the [[http://160.45.63.11/Projects/TDWG-SDD/index.html][Structure of Descriptive Data]] of the Taxonomic Data Working Group. Click on one of the topics below to enter the Wiki. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute.
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Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered. Visit Main.TWikiUsers for a list of subscribers.
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* TWiki.AboutTheWiki
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---++ Site Tools of the %WEB% Web
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*Notes:*
%INCLUDE{"%TWIKIWEB%.YouAreHere"}% To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of the SDD Wiki Web might be the [[SPECIESid.WebHome][Species Identification WebHome]].
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Welcome to the home of %WIKITOOLNAME%.%WEB%. This is a web-based collaboration area for discussion of the subgroup on the Structure of Descriptive Data of the Taxonomic Data Working Group. Click on one of the topics below to enter the Wiki. Click on TWiki.AboutTheWiki if you're new to Wikis. Click on TWiki.TWikiRegistration to register if you want to contribute.
Want automatic email notifications when an SDD topic is modified? Simply edit SDD.WebNotify to add the wiki name you registered.
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Visit Main.TWikiUsers for a list of subscribers
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%INCLUDE{"%TWIKIWEB%.YouAreHere"}% To see the entire list of Wiki Webs supported, visit The Main Main.WebHome. Of special interest to readers of the SDD Wiki Web might be the Species Identification SPECIESid.WebHome
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Welcome to the home of %WIKITOOLNAME%.%WEB%. This is a web-based collaboration area for discussion of the subgroup on the Structure of Descriptive Data of the Taxonomic Data Working Group. Click on one of the topics below to enter the Wiki. Click on AboutTheWiki if you're new to Wikis.
---+++WARNING: I am reorganizing this area to be a topic in the BDEI BDEI.WebHome page so that top level things don't proliferate. When you see nothing much here, there will be an appropriate link. -- Main.BobMorris - 03 Oct 2003
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test mod; ignore -- Main.BobMorris - 02 Oct 2003
test mod; ignore -- Main.BobMorris - 3 Oct 2003
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%META:TOPICINFO{author="PeterThoeny" date="1018175460" format="1.0" version="1.3"}%
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---++ Maintenance of the %WEB% web
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* You are currently in the %WIKITOOLNAME%.%WEB% web. The color code for this web is a (SPECIFY COLOR) background, so you know where you are.
* If you are not familiar with the %WIKITOOLNAME% collaboration tool, please visit %TWIKIWEB%.WelcomeGuest in the %WIKITOOLNAME%.%TWIKIWEB% web first.
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log
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%META:TOPICINFO{author="PeterThoeny" date="1006602023" format="1.0" version="1.2"}%
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%INCLUDE{"%TWIKIWEB%.TWikiWebsTable"}%
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%META:TOPICINFO{author="PeterThoeny" date="997248001" format="1.0beta2" version="1.1"}%
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* WebIndex: Display all %WIKITOOLNAME%.%WEB% topics in alphabetical order.
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