head	1.12;
access;
symbols;
locks; strict;


1.12
date	2009.11.20.02.02.02;	author LeeBelbin;	state Exp;
branches;
next	1.11;

1.11
date	2006.07.25.02.24.55;	author DonovanSharp;	state Exp;
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1.10
date	2006.07.18.07.10.16;	author DonovanSharp;	state Exp;
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1.9
date	2006.07.18.04.48.36;	author DonovanSharp;	state Exp;
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1.8
date	2006.07.07.02.39.07;	author DonovanSharp;	state Exp;
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1.7
date	2006.07.06.05.50.03;	author DonovanSharp;	state Exp;
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1.6
date	2006.07.06.03.10.41;	author DonovanSharp;	state Exp;
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1.5
date	2006.07.05.05.31.01;	author DonovanSharp;	state Exp;
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1.4
date	2006.06.23.02.25.06;	author DonovanSharp;	state Exp;
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1.3
date	2006.06.22.02.48.57;	author DonovanSharp;	state Exp;
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1.2
date	2006.06.22.01.08.59;	author DonovanSharp;	state Exp;
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1.1
date	2006.06.21.06.59.54;	author DonovanSharp;	state Exp;
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@%META:TOPICINFO{author="LeeBelbin" date="1258682522" format="1.1" version="1.12"}%
%META:TOPICPARENT{name="CodedDescription"}%
---++Main.BDI Part 0: Introduction and Primer to the Main.BDI Standard 

---+++4.5 Elements within <SamplingEvent>

The element <SamplingUnit> contains raw sample data for a specimen. <SamplingEvent> contains information about where and when that sampling occurred.

A simple Main.BDI instance document representing a sampling event has the basic structure shown below and in example 4.5.1.1.

%ATTACHURL%/sampledata4.gif

Example 4.5.1.1 - A simple sampling event 

<table bgcolor="#ddddff" border="0" width="100%" cellpadding="5" cellspacing="5" style="border-collapse: collapse" bordercolor="#111111">

<tr>
<td>

<verbatim>
<SampleData>
	<SamplingEvent id="TJM45337">
	<DateTime minute="17" hour="7" day="17" month="7" year="2006"/>
	<DateTimeSpanEnd minute="27" hour="7" day="17" month="7" year="2006"/>
	<GeographicArea ref="g2"/>
	<Coordinates latitude="20.44" longitude="139.29"/>
		<SamplingUnit>
			<Quantitative ref="ch1" value="12"/>
		</SamplingUnit>
                     ...etc
</SampleData>
</verbatim>

</td>
</tr>

</table>


&lt;DateTime&gt; records the date and time when the sampling event occurred, either as a single time point or as the start of a time period.

&lt;DateTimeSpanEnd&gt; records the end of a time span if event timing is recorded as such.
Both date/times may be incomplete in ways not expressible in xs:datetime, e.g. the day and year may be known, but month unknown.

&lt;GeographicArea&gt; is a reference to a geographic area at which the event occurred. This is defined in the element &lt;GeographicAreas&gt; with the basic structure shown below and in example 4.5.1.2.

%ATTACHURL%/geographicarea.gif



Example 4.5.1.2 Defining geographic areas

<table bgcolor="#ddddff" border="0" width="100%" cellpadding="5" cellspacing="5" style="border-collapse: collapse" bordercolor="#111111">

<tr>
<td>

<verbatim>
<GeographicAreas>
  <GeographicArea id="g1">
    <Representation>
      <Label>Worldwide</Label>
    </Representation>
  </GeographicArea>
  <GeographicArea id="g2">
    <Representation>
      <Label>Europe</Label>
    </Representation>
  </GeographicArea>
</GeographicAreas>
</verbatim>

</td>
</tr>

</table>

&lt;Coordinates&gt; records a point on earth at which the event occurred. Elements available are &lt;Latitude&gt;, &lt;Longitude&gt;, &lt;GeodeticDatum&gt;; &lt;Verbatim&gt; (a textual representation of the original location data) and &lt;Literal&gt; (a free-form string in addition to or instead of numeric coordinates (i.e. Charley's Creek, near Chinchilla).

Example 4.5.1.3 Use of the &lt;Coordinate&gt; element

<table bgcolor="#ddddff" border="0" width="100%" cellpadding="5" cellspacing="5" style="border-collapse: collapse" bordercolor="#111111">

<tr>
<td>

<verbatim>
<SampleData>
 <SamplingEvent id="AQ578462">
  <DateTime></DateTime>
   <Coordinates latitude="26.5" longitude="150.5" 
           geodeticdatum="GDA94" verbatim="5km NW of Roma"/>
    <SamplingUnit>
     <Categorical ref="c1">
      <State ref="s1"/>
     </Categorical>
    </SamplingUnit>
 </SamplingEvent>
</SampleData>
</verbatim>

</td>
</tr>

</table>

---++++4.5.2. <noautolink>SamplingUnit</noautolink>

A sampling unit may be an individual organism, a leaf of a tree, a piece of tissue, etc. In each sampling unit multiple characters may have been observed together ('paired observations'). Example: 'leaf shape, length, and width' of a single leaf). Value frequencies (e. g., '2.3': observed 4 x) are not supported; they are useful when only a single character variable is supported, but complicate paired observations unnecessarily. Char. values with a frequency should be entered in repeated <noautolink>SamplingUnits</noautolink>.

A simple Main.BDI code snippet representing part of the sample data above has the basic structure shown below and in Example 4.5.2.1.

%ATTACHURL%/samplingunit2.gif

Example 4.5.2.1. Recording sampling data in Main.BDI

<table bgcolor="#ddddff" border="0" width="100%" cellpadding="5" cellspacing="5" style="border-collapse: collapse" bordercolor="#111111">

<tr>
<td>

<verbatim>
  <SampleData>
    <SamplingEvent id="sev1000">
    <DateTime></DateTime>
      <SamplingUnit>
        <Categorical ref="c1">
          <State ref="s2"/>
        </Categorical>
        <Quantitative ref="c2" value="110"/>
      </SamplingUnit>
      <SamplingUnit>
        <Categorical ref="c1">
          <State ref="s1"/>
        </Categorical>
        <Quantitative ref="c2" value="112"/>
      </SamplingUnit>
      <SamplingUnit>
        <Categorical ref="c1">
          <State ref="s1"/>
        </Categorical>
        <Quantitative ref="c2" value="110"/>
      </SamplingUnit>
      <SamplingUnit>
        <Categorical ref="c1">
          <State ref="s1"/>
        </Categorical>
        <Quantitative ref="c2" value="118"/>
      </SamplingUnit>
    </SamplingEvent>
  </SampleData>
</verbatim>

</td>
</tr>

</table>

-- Main.DonovanSharp - 21 Jun 2006

%META:FILEATTACHMENT{name="geographicarea.gif" attr="" autoattached="1" comment="" date="1153205684" path="geographicarea.gif" size="2794" user="Main.DonovanSharp" version="2"}%
%META:FILEATTACHMENT{name="samplingunit2.gif" attr="" autoattached="1" comment="" date="1153206390" path="samplingunit2.gif" size="30913" user="Main.DonovanSharp" version="1"}%
%META:FILEATTACHMENT{name="sampledata4.gif" attr="" autoattached="1" comment="" date="1153197893" path="sampledata4.gif" size="28691" user="Main.DonovanSharp" version="1"}%
%META:TOPICMOVED{by="DonovanSharp" date="1153196197" from="SDD.SamplingUnit" to="SDD.SamplingEvent"}%
@


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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153794295" format="1.1" version="1.11"}%
d3 1
a3 1
---++SDD Part 0: Introduction and Primer to the SDD Standard 
d9 1
a9 1
A simple SDD instance document representing a sampling event has the basic structure shown below and in example 4.5.1.1.
d111 1
a111 1
A simple SDD code snippet representing part of the sample data above has the basic structure shown below and in Example 4.5.2.1.
d115 1
a115 1
Example 4.5.2.1. Recording sampling data in SDD
@


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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153206616" format="1.1" reprev="1.10" version="1.10"}%
d107 1
a107 1
---++++4.5.2. SamplingUnit
d109 1
a109 1
A sampling unit may be an individual organism, a leaf of a tree, a piece of tissue, etc. In each sampling unit multiple characters may have been observed together ('paired observations'). Example: 'leaf shape, length, and width' of a single leaf). Value frequencies (e. g., '2.3': observed 4 x) are not supported; they are useful when only a single character variable is supported, but complicate paired observations unnecessarily. Char. values with a frequency should be entered in repeated SamplingUnits.
@


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@d1 1
a1 1
%META:TOPICINFO{author="DonovanSharp" date="1153198116" format="1.1" reprev="1.9" version="1.9"}%
d9 1
a9 1
A simple SDD instance document representing a sampling event has the basic structure shown below.
d13 1
a13 1
---++++4.5.1 Sample data elements
d15 1
a15 1
---++++4.5.1.1 DateTime
d17 2
a18 1
Date and time when event occurred; single point, or start of span.
d20 13
a32 1
---++++4.5.1.2 DateTimeSpanEnd
d34 9
a42 1
The end of a time span if event timing is recorded as such.
d45 1
a45 1
---++++4.5.1.3 GeographicArea
d47 1
a47 1
A reference to a geographic area at which the event occurred.
d49 4
d78 1
a78 1
---++++4.5.1.4 Coordinates
d80 1
a80 1
A point on earth at which the event occurred. Elements available are &lt;Latitude&gt;, &lt;Longitude&gt;, &lt;GeodeticDatum&gt;; &lt;Verbatim&gt; (a textual representation of the original location data) and &lt;Literal&gt; (a free-form string in addition to or instead of numeric coordinates (i.e. Charley's Creek, near Chinchilla).
d107 1
a107 1
---++++4.5.1.5 SamplingEvent
d111 1
a111 1
%ATTACHURL%/samplingunit2.jpg
d113 4
d161 2
a162 3
%META:FILEATTACHMENT{name="sampledata2.jpg" attr="" autoattached="1" comment="" date="1150873076" path="sampledata2.jpg" size="19199" user="Main.DonovanSharp" version="1"}%
%META:FILEATTACHMENT{name="sampledata3.jpg" attr="" autoattached="1" comment="" date="1152154542" path="sampledata3.jpg" size="36147" user="Main.DonovanSharp" version="1"}%
%META:FILEATTACHMENT{name="samplingunit.jpg" attr="" autoattached="1" comment="" date="1150944537" path="samplingunit.jpg" size="10520" user="Main.DonovanSharp" version="1"}%
a163 1
%META:FILEATTACHMENT{name="samplingunit2.jpg" attr="" autoattached="1" comment="" date="1152154388" path="samplingunit2.jpg" size="38179" user="Main.DonovanSharp" version="1"}%
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%META:TOPICINFO{author="DonovanSharp" date="1152239947" format="1.1" reprev="1.8" version="1.8"}%
d5 1
a5 1
---+++4.5 Sample data
d7 1
a7 1
Raw sample data are recorded here. The analysed and generalized (e. g. using statistical measures) results are normally also reflected under [[SummaryData][&lt;SummaryData&gt;]] (with origin = 'calculated' and &lt;BasedOnSample&gt; referring to a sample ID).
d9 1
a9 1
%ATTACHURL%/sampledata4.jpg
d11 2
d82 1
a82 1
---++++4.5.1.5 SamplingUnit
d135 1
a135 1
%META:FILEATTACHMENT{name="sampledata4.jpg" attr="" autoattached="1" comment="" date="1152155391" path="sampledata4.jpg" size="30321" user="Main.DonovanSharp" version="1"}%
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%META:TOPICINFO{author="DonovanSharp" date="1152165003" format="1.1" version="1.7"}%
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%ATTACHURL%/sampledata3.jpg
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%META:TOPICINFO{author="DonovanSharp" date="1152155441" format="1.1" reprev="1.6" version="1.6"}%
d28 5
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%ATTACHURL%/sampledata2.jpg
d11 2
d66 1
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d103 1
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%META:TOPICINFO{author="DonovanSharp" date="1151029506" format="1.1" reprev="1.4" version="1.4"}%
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Raw sample data are recorded here. The analysed and generalized (e. g. using statistical measures) results are normally also reflected under SummaryData (with origin = 'calculated' and BasedOnSample referring to a sample ID).
@


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%META:TOPICINFO{author="DonovanSharp" date="1150944537" format="1.1" reprev="1.3" version="1.3"}%
d26 15
d43 1
a43 1
A point on earth at which the event occurred.
d45 15
d100 2
a101 2
%META:FILEATTACHMENT{name="sampledata2.jpg" attachment="sampledata2.jpg" attr="" comment="" date="1150873076" path="sampledata2.jpg" size="19199" stream="sampledata2.jpg" user="Main.DonovanSharp" version="1"}%
%META:FILEATTACHMENT{name="samplingunit.jpg" attachment="samplingunit.jpg" attr="" comment="" date="1150944537" path="samplingunit.jpg" size="10520" stream="samplingunit.jpg" user="Main.DonovanSharp" version="1"}%
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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1150938539" format="1.1" version="1.2"}%
d5 1
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---+++4.5 Sample Data
d11 1
d13 1
d15 53
d71 1
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%META:TOPICINFO{author="DonovanSharp" date="1150873194" format="1.1" reprev="1.1" version="1.1"}%
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d10 1
@