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1.29
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desc
@Initial revision
@


1.29
log
@none
@
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@%META:TOPICINFO{author="WalterBerendsohn" date="1181393266" format="1.1" version="1.29"}%
---++ Schema Changes from version 2.00 to version 2.06

---+++ Schema changes effected

v. 2.01: Added mandatory language attribute to <verbatim>LabelRepr</verbatim> (important for Contact Organisation). 

v. 2.01: Changed preferred attribute in <verbatim>anyUriP</verbatim> to lowercase

v. 2.01: <verbatim> SchemaChangesDataSets/DataSet/Units/Unit/SpecimenUnit/Marks/Mark/IMAGE </verbatim> 

   renamed to: <verbatim> SchemaChangesDataSets/DataSet/Units/Unit/SpecimenUnit/Marks/Mark/Images </verbatim>

   and added element: <verbatim>/Image</verbatim>, type string. 

v. 2.01: <verbatim>Gathering/SiteMeasurementsOrFacts/SiteMeasurementOrFact</verbatim> made unbounded.

v. 2.01: <verbatim>/DataSets/DataSet/Metadata/Scope/GeoecologicalScope</verbatim> 

   renamed to: <verbatim>/DataSets/DataSet/Metadata/Scope/GeoecologicalTerms</verbatim>

v. 2.01: <verbatim>/DataSets/DataSet/Metadata/Scope/TaxonomicScope</verbatim> 

   renamed to: <verbatim>/DataSets/DataSet/Metadata/Scope/TaxonomicTerms</verbatim>

v. 2.01: <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/Organization</verbatim>

   renamed to: <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/Organisation</verbatim>

v. 2.03: Removed all <verbatim>/Annotation/AppInfo</verbatim> elements

v. 2.03: <verbatim>/Unit/PlantGeneticRessourcesUnit/GatheringInstitutionCode</verbatim>

   added

v. 2.03: <verbatim>/Unit/PlantGeneticRessourcesUnit/BreedingCountryCode</verbatim>

   added

v. 2.04: <verbatim>/Unit/PlantGeneticRessourcesUnit/AccessionNames/AccessionName</verbatim>

   added 

v. 2.04: <verbatim>/Unit/PlantGeneticRessourcesUnit/AccessionNames/AccessionNameText</verbatim>

   added 

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Strain</verbatim>
   
   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Serovar</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/SerovarOrSerotype</verbatim>

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Pathovar</verbatim>
   
   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/Identification/Identifier/IdentifiersText</verbatim>

   made optional

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgentsText</verbatim>
  
   made optional

v. 2.05  <verbatim>..[[Contact][type]]/TelephoneNumbers/TelephoneNumber/Device</verbatim>

   made optional

v. 2.05  <verbatim>..[[MeasurementOrFact][type]]/MeasurementOrFactAtomised/IsQuantitative</verbatim>

   made optional

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/AnnotationText</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/AnnotationDate</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/Annotator</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/BotanicalGardenUnit/PlantingDate</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMDatum</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMSubzone</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMZoneFull</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNS</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMText</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMMethod</verbatim>

   deleted

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMEastWest</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMEasting</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNorthSouth</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNorthing</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesText</verbatim>

moved to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesLatLong/CoordinatesText</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesLatLon/IsoAccuracy</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Permits/Permit</verbatim> 

   made unbounded

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/IdentifierPersonName</verbatim> 

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/PersonName</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/SpecimenUnit/DuplicatesDistributedTo</verbatim>

   added

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/Extension</verbatim>

   added

v. 2.06  <verbatim>/DataSets/DataSet/Units/Unit/DateLastEdited</verbatim>
   
   type changed from xs:date to xs:dateTime

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag </verbatim>

   restriction to "+" or "x" added

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag SchemaChanges@@insertionpoint</verbatim>

   added


@


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@d1 166
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---++ Schema Changes from version 2.00 to version 2.06

---+++ Schema changes effected

v. 2.01: Added mandatory language attribute to <verbatim>LabelRepr</verbatim> (important for Contact Organisation). 

v. 2.01: Changed preferred attribute in <verbatim>anyUriP</verbatim> to lowercase

v. 2.01: <verbatim> SchemaChangesDataSets/DataSet/Units/Unit/SpecimenUnit/Marks/Mark/IMAGE </verbatim> 

   renamed to: <verbatim> SchemaChangesDataSets/DataSet/Units/Unit/SpecimenUnit/Marks/Mark/Images </verbatim>

   and added element: <verbatim>/Image</verbatim>, type string. 

v. 2.01: <verbatim>Gathering/SiteMeasurementsOrFacts/SiteMeasurementOrFact</verbatim> made unbounded.

v. 2.01: <verbatim>/DataSets/DataSet/Metadata/Scope/GeoecologicalScope</verbatim> 

   renamed to: <verbatim>/DataSets/DataSet/Metadata/Scope/GeoecologicalTerms</verbatim>

v. 2.01: <verbatim>/DataSets/DataSet/Metadata/Scope/TaxonomicScope</verbatim> 

   renamed to: <verbatim>/DataSets/DataSet/Metadata/Scope/TaxonomicTerms</verbatim>

v. 2.01: <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/Organization</verbatim>

   renamed to: <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/Organisation</verbatim>

v. 2.03: Removed all <verbatim>/Annotation/AppInfo</verbatim> elements

v. 2.03: <verbatim>/Unit/PlantGeneticRessourcesUnit/GatheringInstitutionCode</verbatim>

   added

v. 2.03: <verbatim>/Unit/PlantGeneticRessourcesUnit/BreedingCountryCode</verbatim>

   added

v. 2.04: <verbatim>/Unit/PlantGeneticRessourcesUnit/AccessionNames/AccessionName</verbatim>

   added 

v. 2.04: <verbatim>/Unit/PlantGeneticRessourcesUnit/AccessionNames/AccessionNameText</verbatim>

   added 

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Strain</verbatim>
   
   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Serovar</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/SerovarOrSerotype</verbatim>

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/CultureCollectionUnit/Pathovar</verbatim>
   
   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/Identification/Identifier/IdentifiersText</verbatim>

   made optional

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgentsText</verbatim>
  
   made optional

v. 2.05  <verbatim>..[[Contact][type]]/TelephoneNumbers/TelephoneNumber/Device</verbatim>

   made optional

v. 2.05  <verbatim>..[[MeasurementOrFact][type]]/MeasurementOrFactAtomised/IsQuantitative</verbatim>

   made optional

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/AnnotationText</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/AnnotationDate</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/EAnnotations/Annotation/Annotator</verbatim>

   added

v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/BotanicalGardenUnit/PlantingDate</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMDatum</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMSubzone</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMZoneFull</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNS</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMText</verbatim>

   added

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMMethod</verbatim>

   deleted

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMEastWest</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMEasting</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNorthSouth</verbatim>

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CordinatesUTM/UTMNorthing</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesText</verbatim>

moved to <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesLatLong/CoordinatesText</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/Cordinates/CoordinatesLatLon/IsoAccuracy</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Gathering/Permits/Permit</verbatim> 

   made unbounded

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/IdentifierPersonName</verbatim> 

   renamed to <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/PersonName</verbatim>

v. 2.05 <verbatim>/DataSets/DataSet/Units/Unit/SpecimenUnit/DuplicatesDistributedTo</verbatim>

   added

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/Extension</verbatim>

   added

v. 2.06  <verbatim>/DataSets/DataSet/Units/Unit/DateLastEdited</verbatim>
   
   type changed from xs:date to xs:dateTime

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag </verbatim>

   restriction to "+" or "x" added

v. 2.06 <verbatim>/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag SchemaChanges@@insertionpoint</verbatim>

   added


---+++ Under discussion

Hybrids in Zoology? 

Inclusion of <verbatim>Parameter</verbatim> in <verbatim>MesurementOrFact</verbatim> type. Better to have this as an extension of the type, because it is not needed where the schema is explicit about the parameter (e.g. <verbatim>Altitude</verbatim>).

Mandatory elements for Scientific name, language attribute 
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@Revision 27
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@d1 1
a1 1
---++ Developments since Version 2.00
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@Revision 26
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@d161 1
a161 1
v. 2.06 SchemaChangesDataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag SchemaChanges@@insertionpoint
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1.25
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@Revision 25
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@d157 8
a167 2
The Hybrid Flag in Botanical Name Atomised seems to lack the attribute to indicate its insertion point (before genus name, species epithet, or the rank indication of a an infraspecific name. 

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---+++ Proposed changes

Rename: <verbatim>ISO3166Code</verbatim> to <verbatim>ISO3166CodeL</verbatim> Add: <verbatim>ISO3166CodeN</verbatim> ?? Anybody remembering what this was?

d151 1
a151 1
Inclusion of <verbatim>Parameter</verbatim> in <verbatim>MesurementOrFact</verbatim> type. Better to have this as an extension of the type, because it is not needed where the schema is explicit about the parameter (e.g. <verbatim>Altitude</verbatim>)?
@


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@Revision 20
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@d145 4
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@Revision 19
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@d147 1
a147 3
Rename: <verbatim>ISO3166Code</verbatim> to <verbatim>ISO3166CodeL</verbatim>

Add: <verbatim>ISO3166CodeN</verbatim>
d153 1
a153 1
Mandatory elements for Scientific name, language attribute
@


1.18
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@Revision 18
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@d137 5
a141 1
---+++ Proposed changes
d143 1
a143 1
Rename: <verbatim>IdentifierPersonName</verbatim> -><verbatim>PersonName</verbatim>
d145 1
a145 1
Change <verbatim>Gathering/Permits/Permit</verbatim> should be unbounded
d155 1
a155 28
Mandatory elements for Collector team, Scientific name, language attribute

<verbatim>We just tried to map the GatheringAgents in abcd2.0.
In this case there is a repeatable element (GatheringAgent) below the AltText field (GatheringAgentsText):
 
 Agents 0/1 
     GatheringAgent 0/∞ 
          primarycollector [optional] 
          sequence [optional] 
          AgentText 0/1 smpl-type [String] 
          Organization 0/1 cmpl-type [Organisation] 
          Person 0/1 cmpl-type [PersonName] 
     GatheringAgentsText 1/1 
 
In our training DB we have several collectors per unit, which we map against the GatheringAgent/Person/xxx elements.
But because the aggregated AltText field GatheringAgentsText  is mandatory, we also need to map this!
It is very hard though to do a aggregating concatenation of strings in nearly all databases except postgres. Even SQL Server needs custom written functions for this.
So what will happen is that nobody will map any collector at all !
 
I think we should be VERY careful with mandatory elements - even in relative situations like this one.
So I suggest to make this AltText field optional.
 
Anyone with different opinion on this?
</verbatim>

---+++ Documentation problems

Concept for language attribute in <verbatim>LabelRepr</verbatim> is missing throughout (!Organisation)
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v. 2.05  <verbatim>/DataSets/DataSet/Units/Unit/Identification/Identifier/IdentifiersText}}
a74 1
Added 
d77 1
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added
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added
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added
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   added  
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v. 2.03: <verbatim>/Unit/PGRUnit/GatheringInstitutionCode</verbatim>
d33 1
a33 1
   added*ADD TO WIKI* FAO Institute Code of the institute that has collected the material.
d35 1
a35 1
v. 2.03: <verbatim>/Unit/PGRUnit/BreedingCountryCode</verbatim>
d37 1
a37 1
   added*ADD TO WIKI* ISO 3-letter code for the country where the breeding institute is located.
d39 7
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@Revision 9
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a37 1
   added*ADD TO WIKI*
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renamed to: <verbatim> SchemaChangesDataSets/DataSet/Units/Unit/SpecimenUnit/Marks/Mark/Images </verbatim>
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and added element: <verbatim>/Image</verbatim>, type string. 
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@d15 1
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---+++ Proposed changes 
@