698 lines
45 KiB
Plaintext
698 lines
45 KiB
Plaintext
head 1.5;
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access;
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symbols;
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locks; strict;
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comment @# @;
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1.5
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date 2008.12.01.04.26.35; author TerryCatapano; state Exp;
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branches;
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next 1.4;
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1.4
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date 2008.10.10.19.36.33; author BobMorris; state Exp;
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branches;
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next 1.3;
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1.3
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date 2008.10.10.15.43.51; author BobMorris; state Exp;
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branches;
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next 1.2;
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1.2
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date 2008.10.01.20.17.07; author BobMorris; state Exp;
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branches;
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next 1.1;
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1.1
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date 2008.09.24.05.10.35; author BobMorris; state Exp;
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branches;
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next ;
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desc
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@none
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@
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1.5
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log
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@none
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@
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text
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@%META:TOPICINFO{author="TerryCatapano" date="1228105595" format="1.1" version="1.5"}%
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%META:TOPICPARENT{name="PlaziEOLProject"}%
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-- Main.BobMorris - 24 Sep 2008
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---+++ Initial Example of 25 Aug 2008
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<verbatim>
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<?xml version="1.0"?>
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<rdf:RDF
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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
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xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
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xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
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xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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>
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<spm:SpeciesProfileModel rdf:ID="Aus_Bus_Plazi_2008">
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<spm:hasInformation>
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<spmi:Description rdf:ID="Aus_Bus_Plazi_2008_Description">
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<spm:hasContent xml:lang="la">lorem ipsum, quia dolor sit,
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amet, consectetur, adipisci velit, sed quia non numquam eius modi
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tempora\
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incidunt, ut labore et dolore magnam aliquam quaerat voluptatem. Ut
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enim ad minima veniam, quis nostrum exercitationem ullam corporis
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susci\
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pit laboriosam, nisi ut aliquid ex ea commodi consequatur? Quis autem
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vel eum iure reprehenderit, qui in ea voluptate velit esse,
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</spm:hasC\
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ontent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="Aus_Bus_Plazi_2008_TC">
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<tc:nameString xml:lang="en">Aus Bus Plazi 2008</tc:nameString>
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<tc:rankString xml:lang="en">Species</tc:rankString>
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</tc:TaxonConcept>
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</spm:aboutTaxon>
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</spm:SpeciesProfileModel>
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<tc:TaxonConcept rdf:ID="Aus_Bus_Plazi"/>
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</rdf:RDF>
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</verbatim>
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-- Main.TerryCatapano - 25 Aug 2008
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---+++ Sample result of stylesheet conversion: 6 Sep 2008
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<verbatim>
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<?xml version="1.0" encoding="UTF-8"?><rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#" xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:tax="http://www.taxonx.org/schema/v1" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#">
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<spm:SpeciesProfileModel rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722">
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<spm:hasInformation>
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<spmi:Description rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722_Description_1">
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<spm:hasContent>P. nigro-caeruleo-viridis, nitida et delicatule punctata; alis hyalinis.Female. Length 4 1 / 2 lines. Deep blue-green, with tints of purple in certain lights, particularly on the head, the clypeus with a central longitudinal ridge, its anterior margin slightly emarginate; the flagellum rufo-piceous beneath, the ocelli white. Thorax: the wings hyaline and brilliantly iridescent; the legs dark rufo-piceous with a bright purple tinge. Abdomen delicately punctured, the head and thorax more strongly so; the latter with a semicircular enclosed space at its base, which is smooth and shining.
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</ spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722">
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<tc:nameString xml:lang="en">Prosopis malachisis</tc:nameString>
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<tc:rankString xml:lang="en">Species</tc:rankString>
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</tc:TaxonConcept>
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</spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722"/>
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</spm:SpeciesProfileModel>
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</rdf:RDF>
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</verbatim>
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---+++ New Proposal: 17 Sep 2008
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based on reading of RDF Syntax Spec http://www.w3.org/TR/rdf-syntax-grammar
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rdf:id's function is to reify triples and extends base url given in xml:base (which is the uri of the rdf doc?)
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using rdf:about to specify that taxon concept LSID is the subject of the SPM
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use rdf:resource to specify that the concept LSID is the concept of the about LSID -- not sure about this as it is recursive (A has concept A)?
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This at least validates, however.
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<verbatim>
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<?xml version="1.0" encoding="UTF-8"?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
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xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
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xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
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xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
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xmlns:tax="http://www.taxonx.org/schema/v1" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
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xml:base="http://plazi.org/10199/xxxx">
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<spm:SpeciesProfileModel rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:196242">
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<spm:hasInformation>
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<spmi:Description
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rdf:ID="_Description_1">
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<spm:hasContent>Figs. 14, 35-36.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description
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rdf:ID="_Description_2">
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<spm:hasContent>Worker description.- Head: Head rectangular; vertex planar or weakly
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concave; frons ranging from shining, smooth with almost effaced reticulation to
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shining and finely punctate-reticulate; pilosity of frons consisting of a few
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short, thick, erect setae interspersed with short, appressed setulae. Eye
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moderate, eye width 1-1.5x greatest width of antennal scape; (in full-face view)
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eyes set at about midpoint of head capsule; (viewed in profile) eyes set around
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midline of head capsule; eye elliptical, curvature of inner eye margin may be
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more pronounced than that of its outer margin. Antennal segments 12; antennal
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club three-segmented. Clypeal carinae indicated by multiple weak ridges;
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etc...
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</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="_Concept1" rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:196242 ">
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<tc:nameString xml:lang="en">Monomorium clarinodis Heterick</tc:nameString>
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<tc:rankString xml:lang="en">Species</tc:rankString>
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</tc:TaxonConcept>
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</spm:aboutTaxon>
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</spm:SpeciesProfileModel>
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</rdf:RDF>
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</verbatim>
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---++ Deprecation of tc:rankString
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---+++ Example of 23 September 2008
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Some changes:
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* SPM doc itself is subject of spm:SpeciesProfileModel (via xml:base)
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* no non-referenced namespace declarations
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* an spmi:Description now for each *paragraph* under a tax:Description element
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* spm:aboutTaxon now includes tc:hasInformation with LSID of concept as value of rdf:resource
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* use "en" for "nomenclatural language"?
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However, this example uses a deprecated treatment of rank.
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[[http://rs.tdwg.org/ontology/voc/TaxonConcept#TaxonConcept][see wiki page]]
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<blockquote>
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*Deprecated* The taxonomic rank of this concept as a string. A string representation of the rank of this concept. It is highly recommended that the rank property be used along with this one unless the correct rank is not available in the rank vocabulary. No direct equivalent in TCS but is string version of /DataSet/TaxonConcepts/TaxonConcept/Rank. Requested by data suppliers. After discussions between a number of parties this property is considered to be deprecated. The rank of a TaxonConcept should be indicated by including a TaxonName of the appropriate rank in the hasName property even if the name object is empty apart from the rank.
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</blockquote>
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---
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<verbatim>
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<?xml version="1.0" encoding="UTF-8"?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
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xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
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xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
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xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
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<spm:SpeciesProfileModel rdf:ID="spm_1">
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_1_1_1">
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<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow,
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mandibles dark red, teeth, scapes, anterior border of clypeus, and extreme
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anterior angles of cheeks black, clothed with very sparse outstanding longer and
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shorter yellow hairs and some fine very short decumbent yellow hairs. Sculpture
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consisting of very fine reticulations, a little stronger on
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head.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_1_1_2">
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<spm:hasContent>Head large, triangular, considerably broader behind than in front,
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broadest a little before posterior angles, which are rounded and prominent,
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posterior border excised, slightly sinuate on each side; mandibles massive,
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strongly punctured and with transverse ridges, masticatory border armed with six
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etc...</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_1_1_3">
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<spm:hasContent>[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
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the extreme anterior angle of clypens and cheeks blackish; the mandibles are
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pale yellow with the teeth red. The sculpture and hairs are similar.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_1_1_4">
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<spm:hasContent>Head long, narrow, broader in front than behind, broadest a little
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in front of sides of head, narrowed, rather sharply behind eyes to base; teeth
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to mandibles somewhat more slender and sharper, carinae on clypeus a little more
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pronounced; eyes more prominent. Thorax narrow and slender; pronotum more
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narrowed to apex. Scale of petiole of similar shape, but a little narrower;
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gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="_tc1">
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<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
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<tc:rankString xml:lang="en">Species</tc:rankString>
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<tc:hasInformation
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rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
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</tc:TaxonConcept>
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</spm:aboutTaxon>
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</spm:SpeciesProfileModel>
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<spm:SpeciesProfileModel rdf:ID="spm_2">
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_2_1_1">
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<spm:hasContent> Very like trispinosus but without the two shorter spines on the
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mesonotum. The sculpture is different, and the species is also a little darker
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in colour. </spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_2_1_2">
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<spm:hasContent>[[ worker ]]. Head: the sculpture is quite different; the disc is
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smooth and shining, from the outer part of the smooth surface at sides
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semicircular carinae run on each side along the cheeks, and from the posterior
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part a few weaker carinae extend towards base of head, the space between these
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and the posterior border of head being smooth and shining.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_2_1_3">
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<spm:hasContent>Thorax: the ridges on the pronotum are considerably less marked; the
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mesonotum is smooth and shining and there are no spines present. The ridges on
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the sides of the thorax are less marked; the dorsal surface and the declivity of
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the epinotum are smooth and shining.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_2_1_4">
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<spm:hasContent>The spines on the pronotum are slightly longer and stronger, and
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those of the epinotum, being of a different shape, being slightly shorter, and
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projecting outwards then inwards in an even curve. Long. 5 mm.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="_tc2">
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<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
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<tc:rankString xml:lang="en">Species</tc:rankString>
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<tc:hasInformation
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rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
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</tc:TaxonConcept>
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</spm:aboutTaxon>
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</spm:SpeciesProfileModel>
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etc...
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</rdf:RDF>
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</verbatim>
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---+++ Example of 24 September 2008
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* With proper handling of rank.
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* hasContent now for each Description section, not each Paragraph in the Description
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[[http://www.w3.org/RDF/Validator/ARPServlet?URI=http://plazi.cs.umb.edu:8180/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl&PARSE=Parse+URI%3A+&TRIPLES_AND_GRAPH=PRINT_BOTH&FORMAT=PNG_EMBED][For validation, triples and graph of the *current* version (i.e., not necessarily the same as the example below) at W3C online validator]]
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<verbatim>
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<?xml version="1.0" encoding="UTF-8"?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
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xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
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xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
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xml:base="">
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<spm:SpeciesProfileModel rdf:ID="spm_1">
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<spm:hasInformation>
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<spmi:Description rdf:ID="_Description_1_1">
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<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth,
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scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very
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sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs.
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Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular,
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considerably broader behind than in front, broadest a little before posterior angles, which are
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rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive,
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strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth,
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the apical one being the longest, curved and sharp, the next two longer and sharper than the last
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three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border
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considerably produced in middle where it is somewhat crenulate, and five large punctures are present
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along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the
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surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas
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rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are
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considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the
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frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes
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large, broad oval, rather flat, are situated rather high up before the middle of the sides of the
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head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of
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head funiculus with all the joints elongate, first slightly shorter than the others, last joint long
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and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender
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behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck,
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posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but
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distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather
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straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and
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declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base,
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anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and
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forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long;
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tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
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the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the
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teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind,
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broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to
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mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more
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prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar
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shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
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</spmi:Description>
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</spm:hasInformation>
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<spm:aboutTaxon>
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<tc:TaxonConcept rdf:ID="_tc1">
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<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
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<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn1">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_2">
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_2_1">
|
|
<spm:hasContent> Very like trispinosus but without the two shorter spines on the mesonotum. The
|
|
sculpture is different, and the species is also a little darker in colour. [[ worker ]]. Head: the
|
|
sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth
|
|
surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part
|
|
a few weaker carinae extend towards base of head, the space between these and the posterior border
|
|
of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked;
|
|
the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the
|
|
thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and
|
|
shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum,
|
|
being of a different shape, being slightly shorter, and projecting outwards then inwards in an even
|
|
curve. Long. 5 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc2">
|
|
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn2">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_3">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc3">
|
|
<tc:nameString xml:lang="en">Solenopsis mameti Donisthorpe</tc:nameString>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36308"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn3">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_4">
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_4_1">
|
|
<spm:hasContent>[[ worker ]]. Black, rather shining, mandibles, antennae and legs dirty pale yellow, the
|
|
petiole brighter yellow. Sculpture: head and gaster finely reticulate, thorax more distinctly so,
|
|
clothed with fine golden pubescence, which is more pronounced on gaster and a few short outstanding
|
|
hairs, more being present on gaster.Head oval, somewhat narrower in front than behind, broadest a
|
|
little behind eyes, posterior angles rounded,. posterior border excised in middle; mandibles
|
|
moderately long, triangular apical tooth sharp and curved, masticatory border armed with a number of
|
|
small sharp teeth, the second and fourth being longer than the third; clypeus fairly large, anterior
|
|
border excised in middle, posterior border extending in a point between the frontal carinae; frontal
|
|
area small but distinct; frontal carinae short, low, fairly wide apart, parallel; eyes large, round,
|
|
rather prominent, situated in front of sides of head; antennal 12 - jointed, scape long, extending
|
|
beyond posterior border of head, funiculus with first joint longer than third, second joint the
|
|
shortest, rest of joints gradually increasing in length and breadth, last joint as long as the two
|
|
preceding taken together. Thorax with a neck, longer than broad, constricted in middle, broadest at
|
|
humeral angles; pronotum large, transverse, convex, anterior border margined, posterior border
|
|
semicircular encircling mesonotum; mesonotum shorter and narrower than pronotum, a little longer
|
|
than broad, slightly convex; sutures between pro- and mesonotum and meso- and epinotum well marked,
|
|
especially the latter; epinotum with angle between dorsal surface and declivity well marked,
|
|
declivity abrupt, somewhat flat, considerably longer than dorsal surface. Petiole narrow, flat,
|
|
slightly longer than broad, scale entirely rudimentary; gaster oval, overhanging the petiole,
|
|
pointed at apex, fifth segment extending a little beyond the fourth, cloacial opening terminal.
|
|
Long. 2.5 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc4">
|
|
<tc:nameString xml:lang="en">Technomyrmex primroseae</tc:nameString>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36839"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn4">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
</spm:SpeciesProfileModel>
|
|
etc...
|
|
</rdf:RDF>
|
|
|
|
</verbatim>
|
|
|
|
---+++ Example of October 1
|
|
|
|
* created tbase:Actor to contain publication info referenced from tc:accordingTo in tc:TaxonConcept
|
|
* moved aboutTaxon to be 1st child of spm:SpeciesProfileModel
|
|
* filtered out treatments without description sections
|
|
* still not OWL valid because of use of rdf:resource on ?hasInformation for LSID
|
|
|
|
<verbatim>
|
|
<?xml version="1.0" encoding="UTF-8"?>
|
|
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:tcom="http://rs.tdwg.org/ontology/voc/Common#" xmlns:tbase="http://rs.tdwg.org/ontology/Base#" xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#" xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tcore="http://rs.tdwg.org/ontology/Core#" xmlns:tpcit="http://rs.tdwg.org/ontology/voc/PublicationCitation#" xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
|
|
<tbase:Actor rdf:ID="_actor1">
|
|
<tcom:publishedInCitation>
|
|
<tcom:publicationCitation rdf:ID="_pubcit">
|
|
<tpcit:authorship>Donisthorpe, H. S. J. K.</tpcit:authorship>
|
|
<tpcit:title>A new Camponotus from Madagascar and a small collection of ants from Mauritius.</tpcit:title>
|
|
<tpcit:parentPublicationString>Annals and Magazine of Natural History</tpcit:parentPublicationString>
|
|
<tpcit:volume>(12)2</tpcit:volume>
|
|
<tpcit:datePublished>1949</tpcit:datePublished>
|
|
<tpcit:pages>271-275</tpcit:pages>
|
|
</tcom:publicationCitation>
|
|
</tcom:publishedInCitation>
|
|
</tbase:Actor>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_1">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc1">
|
|
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
|
|
<tc:accordingTo rdf:resource="#actor1"/>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn1">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_1_1">
|
|
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth, scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs. Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular, considerably broader behind than in front, broadest a little before posterior angles, which are rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive, strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth, the apical one being the longest, curved and sharp, the next two longer and sharper than the last three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border considerably produced in middle where it is somewhat crenulate, and five large punctures are present along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes large, broad oval, rather flat, are situated rather high up before the middle of the sides of the head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of head funiculus with all the joints elongate, first slightly shorter than the others, last joint long and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck, posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base, anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long; tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind, broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_2">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc2">
|
|
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
|
|
<tc:accordingTo rdf:resource="#actor1"/>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn2">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_2_1">
|
|
<spm:hasContent>
|
|
Very like
|
|
trispinosus
|
|
but without the two shorter spines on the mesonotum. The sculpture is different, and the species is also a little darker in colour.
|
|
[[ worker ]]. Head: the sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part a few weaker carinae extend towards base of head, the space between these and the posterior border of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked; the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum, being of a different shape, being slightly shorter, and projecting outwards then inwards in an even curve. Long. 5 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="spm_3">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:ID="_tc3">
|
|
<tc:nameString xml:lang="en">Technomyrmex primroseae</tc:nameString>
|
|
|
|
<tc:accordingTo rdf:resource="#actor1"/>
|
|
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36839"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn3">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_3_1">
|
|
<spm:hasContent>[[ worker ]]. Black, rather shining, mandibles, antennae and legs dirty pale yellow, the petiole brighter yellow. Sculpture: head and gaster finely reticulate, thorax more distinctly so, clothed with fine golden pubescence, which is more pronounced on gaster and a few short outstanding hairs, more being present on gaster.Head oval, somewhat narrower in front than behind, broadest a little behind eyes, posterior angles rounded,. posterior border excised in middle; mandibles moderately long, triangular apical tooth sharp and curved, masticatory border armed with a number of small sharp teeth, the second and fourth being longer than the third; clypeus fairly large, anterior border excised in middle, posterior border extending in a point between the frontal carinae; frontal area small but distinct; frontal carinae short, low, fairly wide apart, parallel; eyes large, round, rather prominent, situated in front of sides of head; antennal 12 - jointed, scape long, extending beyond posterior border of head, funiculus with first joint longer than third, second joint the shortest, rest of joints gradually increasing in length and breadth, last joint as long as the two preceding taken together. Thorax with a neck, longer than broad, constricted in middle, broadest at humeral angles; pronotum large, transverse, convex, anterior border margined, posterior border semicircular encircling mesonotum; mesonotum shorter and narrower than pronotum, a little longer than broad, slightly convex; sutures between pro- and mesonotum and meso- and epinotum well marked, especially the latter; epinotum with angle between dorsal surface and declivity well marked, declivity abrupt, somewhat flat, considerably longer than dorsal surface. Petiole narrow, flat, slightly longer than broad, scale entirely rudimentary; gaster oval, overhanging the petiole, pointed at apex, fifth segment extending a little beyond the fourth, cloacial opening terminal. Long. 2.5 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
</spm:SpeciesProfileModel>
|
|
</rdf:RDF>
|
|
|
|
</verbatim>
|
|
|
|
---++ Example of October 10
|
|
|
|
|
|
|
|
[[http://plazi.cs.umb.edu:8080/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl][Click for the *current* result (i.e., not necessarily the same as the example below) of Plazi's REST service]] applied to the TaxonX version of Plazi document 5959. This may be slightly different from the example, which was fetched on October 10.
|
|
|
|
[[http://www.w3.org/RDF/Validator/ARPServlet?URI=http://plazi.cs.umb.edu:8080/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl&PARSE=Parse+URI%3A+&TRIPLES_AND_GRAPH=PRINT_BOTH&FORMAT=PNG_EMBED][Click for RDF validation, triples and graph of the *current* version (i.e., not necessarily the same as the example below) at the W3C online RDF validator]]
|
|
|
|
<verbatim>
|
|
<?xml version="1.0" encoding="UTF-8"?>
|
|
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
|
|
xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
|
|
xmlns:tcom="http://rs.tdwg.org/ontology/voc/Common#" xmlns:tbase="http://rs.tdwg.org/ontology/Base#"
|
|
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
|
|
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tcore="http://rs.tdwg.org/ontology/Core#"
|
|
xmlns:tpcit="http://rs.tdwg.org/ontology/voc/PublicationCitation#"
|
|
xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
|
|
xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
|
|
<tbase:Actor rdf:ID="_actor1">
|
|
<tcom:publicationCitation rdf:ID="_pubcit">
|
|
<tpcit:authorship>Donisthorpe, H. S. J. K.</tpcit:authorship>
|
|
<tpcit:title>A new Camponotus from Madagascar and a small collection of ants from Mauritius.</tpcit:title>
|
|
<tpcit:parentPublicationString>Annals and Magazine of Natural History</tpcit:parentPublicationString>
|
|
<tpcit:volume>(12)2</tpcit:volume>
|
|
<tpcit:datePublished>1949</tpcit:datePublished>
|
|
<tpcit:pages>271-275</tpcit:pages>
|
|
</tcom:publicationCitation>
|
|
</tbase:Actor>
|
|
<spm:SpeciesProfileModel rdf:ID="_spm_1">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414">
|
|
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
|
|
<tc:accordingTo rdf:resource="#_actor1"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn1">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
<spm:hasInformation>
|
|
|
|
<spmi:Description rdf:ID="_Description_1_1">
|
|
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth,
|
|
scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very
|
|
sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs.
|
|
Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular,
|
|
considerably broader behind than in front, broadest a little before posterior angles, which are
|
|
rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive,
|
|
strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth,
|
|
the apical one being the longest, curved and sharp, the next two longer and sharper than the last
|
|
three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border
|
|
considerably produced in middle where it is somewhat crenulate, and five large punctures are present
|
|
along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the
|
|
surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas
|
|
rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are
|
|
considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the
|
|
frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes
|
|
large, broad oval, rather flat, are situated rather high up before the middle of the sides of the
|
|
head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of
|
|
head funiculus with all the joints elongate, first slightly shorter than the others, last joint long
|
|
and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender
|
|
behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck,
|
|
posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but
|
|
distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather
|
|
straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and
|
|
declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base,
|
|
anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and
|
|
forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long;
|
|
tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
|
|
the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the
|
|
teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind,
|
|
broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to
|
|
mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more
|
|
prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar
|
|
shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
</spm:SpeciesProfileModel>
|
|
<spm:SpeciesProfileModel rdf:ID="_spm_2">
|
|
<spm:aboutTaxon>
|
|
<tc:TaxonConcept rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647">
|
|
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
|
|
<tc:accordingTo rdf:resource="#_actor1"/>
|
|
<tc:hasName>
|
|
<tn:TaxonName rdf:ID="_tn2">
|
|
<tn:rankString xml:lang="en">Species</tn:rankString>
|
|
</tn:TaxonName>
|
|
|
|
</tc:hasName>
|
|
</tc:TaxonConcept>
|
|
</spm:aboutTaxon>
|
|
<spm:hasInformation>
|
|
<spmi:Description rdf:ID="_Description_2_1">
|
|
<spm:hasContent> Very like trispinosus but without the two shorter spines on the mesonotum. The
|
|
sculpture is different, and the species is also a little darker in colour. [[ worker ]]. Head: the
|
|
sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth
|
|
surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part
|
|
a few weaker carinae extend towards base of head, the space between these and the posterior border
|
|
of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked;
|
|
the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the
|
|
thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and
|
|
shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum,
|
|
being of a different shape, being slightly shorter, and projecting outwards then inwards in an even
|
|
curve. Long. 5 mm.</spm:hasContent>
|
|
</spmi:Description>
|
|
</spm:hasInformation>
|
|
</spm:SpeciesProfileModel>
|
|
|
|
</rdf:RDF>
|
|
|
|
|
|
</verbatim>
|
|
-- Main.TerryCatapano - 10 Oct 2008@
|
|
|
|
|
|
1.4
|
|
log
|
|
@none
|
|
@
|
|
text
|
|
@d1 1
|
|
a1 1
|
|
%META:TOPICINFO{author="BobMorris" date="1223667393" format="1.1" version="1.4"}%
|
|
d488 116
|
|
a603 1
|
|
</verbatim>@
|
|
|
|
|
|
1.3
|
|
log
|
|
@none
|
|
@
|
|
text
|
|
@d1 1
|
|
a1 1
|
|
%META:TOPICINFO{author="BobMorris" date="1223653431" format="1.1" version="1.3"}%
|
|
d400 89
|
|
a488 1
|
|
</verbatim> @
|
|
|
|
|
|
1.2
|
|
log
|
|
@none
|
|
@
|
|
text
|
|
@d1 1
|
|
a1 1
|
|
%META:TOPICINFO{author="BobMorris" date="1222892227" format="1.1" version="1.2"}%
|
|
d249 152
|
|
a400 1
|
|
</verbatim>@
|
|
|
|
|
|
1.1
|
|
log
|
|
@none
|
|
@
|
|
text
|
|
@d1 1
|
|
a1 1
|
|
%META:TOPICINFO{author="BobMorris" date="1222233035" format="1.1" reprev="1.1" version="1.1"}%
|
|
d126 124
|
|
@
|