3045 lines
75 KiB
Plaintext
3045 lines
75 KiB
Plaintext
head 1.112;
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access;
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symbols;
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locks; strict;
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comment @# @;
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1.112
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date 2010.05.05.16.33.11; author RenatoDeGiovanni; state Exp;
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date 2009.09.09.04.59.11; author PiersHiggs; state Exp;
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date 2008.09.26.20.02.35; author RenatoDeGiovanni; state Exp;
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date 2008.09.26.18.56.07; author RenatoDeGiovanni; state Exp;
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date 2007.08.21.08.52.21; author KevinRichards; state Exp;
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date 2007.04.20.12.06.29; author RenatoDeGiovanni; state Exp;
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date 2007.04.13.01.25.15; author RenatoDeGiovanni; state Exp;
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date 2007.04.09.22.34.00; author RenatoDeGiovanni; state Exp;
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date 2007.03.27.09.15.24; author RogerHyam; state Exp;
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date 2007.02.28.00.43.37; author RenatoDeGiovanni; state Exp;
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date 2007.01.30.21.56.12; author RenatoDeGiovanni; state Exp;
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date 2007.01.28.23.34.27; author RenatoDeGiovanni; state Exp;
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date 2007.01.10.13.00.33; author RicardoPereira; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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date 2007.01.09.00.00.00; author MoinMoin; state Exp;
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desc
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@Initial revision
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@
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1.112
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log
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@none
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@
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text
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@%META:TOPICINFO{author="RenatoDeGiovanni" date="1273077191" format="1.1" version="1.112"}%
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<!-- language:en
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-->
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<!-- pragma section-numbers off
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-->
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---+ Wiki for the TAPIR Protocol
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|
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This Wiki was created for discussing and documenting the TAPIR protocol.
|
|
|
|
If you want to subscribe to news from this Wiki, take a look at the [[WebRss][RSS Feed]] or WebNotify.
|
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---+++ Main links
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|
* [[http://www.tdwg.org/subgroups/tapir/ TAPIR official website]]
|
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* [[http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd][Latest XML Schema]]
|
|
* [[http://www.tdwg.org/activities/tapir/specification][Latest specification]]
|
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* ExampleTapirMessages
|
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* TapirSoftware
|
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* RoadMap
|
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* FrequentlyAskedQuestions
|
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* TapirMailingList
|
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* TapirHistory
|
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|
|
---+++ Other links
|
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|
|
* TAPIR and OAI-PMH (TapirOAIPMH)
|
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* TapirRdf - using TAPIR providers to serve valid RDF
|
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* MappingConceptualSchemas - a suggested approach to relate concepts from different schemas
|
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* Ideas about PossibleChanges in the protocol
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---+++ Wiki links
|
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|
|
* GlossaryOfTerms
|
|
* [[WebChanges][Recent Changes]]: see where people are currently working.
|
|
* [[Sandbox.WebHome][Sandbox]]: feel free to change this page and experiment with editing
|
|
* WebSearchAdvanced: search or browse Wiki contents in various ways
|
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@
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%META:TOPICINFO{author="PiersHiggs" date="1252472351" format="1.1" version="1.111"}%
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d9 1
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Welcome! This Wiki was created for discussing and documenting the TAPIR protocol.
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d11 1
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a11 1
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Take a look at the [[WebRss][RSS Feed]] or WebNotify if you want to subscribe to news from this wiki.
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d13 1
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a13 5
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---+++TAPIR Review
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* TapirReview - a page for the collation of file submissions for the Review process
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---+++ Useful links
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d25 1
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a25 1
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---+++ Latest Activities in the Wiki
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d27 1
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a27 1
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* PossibleChanges in the protocol
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* TAPIR and OAI-PMH (TapirOAIPMH)
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1222455367" format="1.1" reprev="1.109" version="1.109"}%
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* MappingConceptualSchemas
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@
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%META:TOPICINFO{author="KevinRichards" date="1187686341" format="1.1" version="1.108"}%
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d9 1
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a9 1
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation query protocol to supersede the CurrentProtocols in use within the biodiversity informatics community.
|
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d13 1
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a13 1
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---+++ Introduction
|
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d15 3
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a17 8
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During the 2004 TDWG meeting in Christchurch, NZ, the presented unified protocol was named TAPIR, TDWG Access Protocol for Information Retrieval. It was agreed to start testing the protocol by reimplementing two data provider software, each one carried out by one of the existing network communities, [[BiocaseProtocol][BioCASe]] and [[DigirProtocol][DiGIR]].
|
|
|
|
The previous [[BiocaseProtocol][BioCASe]] PyWrapper (http://www.pywrapper.org) and [[DigirProvider][PHP DiGIR provider]] (a new version known as TapirLink) are already fully functional TAPIR providers.
|
|
|
|
---+++ Latest Version
|
|
|
|
* [[http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd][Latest XML Schema]] for the protocol
|
|
* [[http://www.tdwg.org/dav/subgroups/tapir/1.0/docs/][Specification]]
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d20 2
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---+++ Useful links
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* [[http://www.tdwg.org/subgroups/tapir/ TAPIR official website]]
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d23 1
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* FrequentlyAskedQuestions
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* RoadMap
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d25 1
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---+++ Current Wiki Activities
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d27 1
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a32 44
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---+++ History about the Integration Process
|
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|
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---+++++ General Protocol Requirements
|
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|
|
* Integrate the CurrentProtocols being used by different networks from the biodiversity informatics community.
|
|
* Try to accomodate the needs of other BiodiversityDataStandards.
|
|
* Keep the protocol generic so that other communities (not only biodiversity informatics) could use it and possibly collaborate.
|
|
* Try to impose minimum impact on SoftwareRelatedToPreviousProtocols.
|
|
|
|
---+++++ Preparatory Documentation
|
|
|
|
* DifferencesBetweenProtocols: Documentation about differences between the CurrentProtocols.
|
|
* DifferencesTapirWfs: Documentation about the differences between TAPIR and Web Feature Service (WFS) from OGC
|
|
|
|
---+++++ Integration Proposals
|
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|
|
* ProposalPresentedInTdwg 2004 as [[http://ww2.biocase.org/svn/tapir/tags/protocol/proposal_2004/report.pdf][PDF]], [[http://ww2.biocase.org/svn/tapir/tags/protocol/proposal_2004/protocol.xsd][XML schema]]
|
|
* Older proposals
|
|
* FirstProposal, XQuery based
|
|
* SecondProposal, straightforward approach (schema: http://www.bgbm.org/biodivinf/Schema/protocol2.xsd)
|
|
* ThirdProposal, the same as the second proposal but using SOAP
|
|
* FourthProposal, based on the SecondProposal but incorporating the BerlinMeetingResults
|
|
* FifthProposal, current proposal based on the SecondProposal, FourthProposal and incorporating new suggestions/changes since the BerlinProtocolMeeting
|
|
* LatestProposal
|
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|
|
---+++++ Requested Features
|
|
|
|
* AdditionalIdeas to be discussed.
|
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|
|
---+++++ Discussion about Output Models
|
|
(output models used to be called views, thats why you will still find the term view being mentioned in some places)
|
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|
|
Are models determinate or do they depend upon the providers datasource structure? Is the current model definition sufficient? In particular some potential problems have surfaced during the PyWrapper implementation:
|
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|
|
* EmptyRepeatableRegionProblem
|
|
* IndexingElementExplosion
|
|
|
|
To address these issues the following options are being considered:
|
|
|
|
* SemanticMapping: Use ontologies to do the output model mapping
|
|
* DroppingDynamicOutputModels: Restrict providers to offer a set of predefined output models.
|
|
* ObjectOrientedApproach: Make TAPIR truly object oriented and serve interlinked, compound objects instead of XML documents. A very different approach which causes a lot of reorganisation of the protocol. Promosing for the future in a time where GUIDs are omnipresent.
|
|
|
|
---+++ Other
|
|
a34 6
|
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* BerlinProtocolMeeting and the BerlinMeetingResults
|
|
* [[MadridResults2005][Madrid protocol meeting results]]
|
|
* TapirWorkshop2007 (Copenhagen)
|
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|
|
---+++++ Useful Wiki links
|
|
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* WebSearchAdvanced: search or browse the database in various ways
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@
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1176427515" format="1.1" reprev="1.106" version="1.106"}%
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@
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1176158040" format="1.1" reprev="1.105" version="1.105"}%
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* [[http://www.tdwg.org/subgroups/tapir/][TAPIR web site]]
|
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@
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%META:TOPICINFO{author="RogerHyam" date="1174986924" format="1.1" version="1.104"}%
|
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d13 1
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a13 1
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---+++ TAPIR Introduction
|
|
a31 1
|
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* TapirRdf - using TAPIR providers to serve valid RDF
|
|
d35 1
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a35 1
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* TapirWorkshop2007
|
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d85 1
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@
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1172623417" format="1.1" version="1.103"}%
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@
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1170194172" format="1.1" version="1.102"}%
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@
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%META:TOPICINFO{author="RenatoDeGiovanni" date="1170027267" format="1.1" version="1.101"}%
|
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d9 1
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a9 1
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation called TAPIR for the CurrentProtocols in use within the biodiversity informatics community.
|
|
a12 2
|
|
-----
|
|
|
|
d17 1
|
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a17 1
|
|
The previous [[BiocaseProtocol][BioCASe]] PyWrapper (http://www.pywrapper.org) and [[DigirProvider][PHP DiGIR provider]] (the new version known as TapirLink) are already fully functional TAPIR providers.
|
|
d25 6
|
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a30 1
|
|
-----
|
|
d32 1
|
|
a32 1
|
|
---+++ Current Debate
|
|
d34 1
|
|
a34 1
|
|
Please note there's also a TapirMailingList.
|
|
a35 20
|
|
---+++++ Discussion about Output Models
|
|
(output models used to be called views, thats why you will still find the term view being mentioned in some places)
|
|
|
|
Are models determinate or do they depend upon the providers datasource structure? Is the current model definition sufficient? In particular some potential problems have surfaced during the PyWrapper implementation:
|
|
|
|
* EmptyRepeatableRegionProblem
|
|
* IndexingElementExplosion
|
|
|
|
To address these issues the following options are being considered:
|
|
|
|
* SemanticMapping: Use ontologies to do the output model mapping
|
|
* DroppingDynamicOutputModels: Restrict providers to offer a set of predefined output models.
|
|
* ObjectOrientedApproach: Make TAPIR truly object oriented and serve interlinked, compound objects instead of XML documents. A very different approach which causes a lot of reorganisation of the protocol. Promosing for the future in a time where GUIDs are omnipresent.
|
|
|
|
---+++++ Requested Features
|
|
|
|
* AdditionalIdeas to be discussed.
|
|
|
|
-----
|
|
|
|
d61 17
|
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a77 1
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-----
|
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@
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%META:TOPICINFO{author="RicardoPereira" date="1168434033" format="1.1" version="1.100"}%
|
|
d11 1
|
|
a11 1
|
|
Take a look at the [[WebRss][RSS Feed]] or WebNotify if you want to subscribe to [some] news of this wiki.
|
|
d17 1
|
|
a17 1
|
|
During the 2004 TDWG meeting in Christchurch, NZ, the presented unified protocol was named TAPIR, TDWG Access Protocol for Information Retrieval. It was agreed to start testing the protocol by reimplementing two data provider software, each one carried out by one of the existing network communities, BioCASe and DiGIR.
|
|
d19 1
|
|
a19 1
|
|
The previous BioCASe PyWrapper is already a fully functional TAPIR provider (http://www.pywrapper.org). On the other hand the PHP DiGIR provider is also being updated to support TAPIR and will be called TapirLink.
|
|
d23 2
|
|
a24 2
|
|
* [[http://ww2.biocase.org/svn/tapir/trunk/protocol/tapir.xsd][Latest XML Schema]] for the protocol
|
|
* LatestProposal
|
|
d76 1
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d84 1
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@
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@Revision 100
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@
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@d1 89
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a89 87
|
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<!-- language:en
|
|
-->
|
|
<!-- pragma section-numbers off
|
|
-->
|
|
|
|
---+ Wiki for the TAPIR Protocol
|
|
|
|
Welcome! This Wiki was created for discussing and documenting a unified 2nd generation called TAPIR for the CurrentProtocols in use within the biodiversity informatics community.
|
|
|
|
Take a look at the Self:RSSFeed or HelpOnEmailNotification if you want to subscribe to [some] news of this wiki.
|
|
|
|
-----
|
|
|
|
---+++ TAPIR Introduction
|
|
|
|
During the 2004 TDWG meeting in Christchurch, NZ, the presented unified protocol was named TAPIR, TDWG Access Protocol for Information Retrieval. It was agreed to start testing the protocol by reimplementing two data provider software, each one carried out by one of the existing network communities, BioCASe and DiGIR.
|
|
|
|
The previous BioCASe PyWrapper is already a fully functional TAPIR provider (http://www.pywrapper.org). On the other hand the PHP DiGIR provider is also being updated to support TAPIR and will be called TapirLink.
|
|
|
|
---+++ Latest Version
|
|
|
|
* [[http://ww2.biocase.org/svn/tapir/trunk/protocol/tapir.xsd][Latest XML Schema]] for the protocol
|
|
* LatestProposal
|
|
* ExampleTapirMessages
|
|
|
|
-----
|
|
|
|
---+++ Current Debate
|
|
|
|
Please note there's also a TapirMailingList.
|
|
|
|
---+++++ Discussion about Output Models
|
|
(output models used to be called views, thats why you will still find the term view being mentioned in some places)
|
|
|
|
Are models determinate or do they depend upon the providers datasource structure? Is the current model definition sufficient? In particular some potential problems have surfaced during the PyWrapper implementation:
|
|
|
|
* EmptyRepeatableRegionProblem
|
|
* IndexingElementExplosion
|
|
|
|
To address these issues the following options are being considered:
|
|
|
|
* SemanticMapping: Use ontologies to do the output model mapping
|
|
* DroppingDynamicOutputModels: Restrict providers to offer a set of predefined output models.
|
|
* ObjectOrientedApproach: Make TAPIR truly object oriented and serve interlinked, compound objects instead of XML documents. A very different approach which causes a lot of reorganisation of the protocol. Promosing for the future in a time where GUIDs are omnipresent.
|
|
|
|
---+++++ Requested Features
|
|
|
|
* AdditionalIdeas to be discussed.
|
|
|
|
-----
|
|
|
|
---+++ History about the Integration Process
|
|
|
|
---+++++ General Protocol Requirements
|
|
|
|
* Integrate the CurrentProtocols being used by different networks from the biodiversity informatics community.
|
|
* Try to accomodate the needs of other BiodiversityDataStandards.
|
|
* Keep the protocol generic so that other communities (not only biodiversity informatics) could use it and possibly collaborate.
|
|
* Try to impose minimum impact on SoftwareRelatedToPreviousProtocols.
|
|
|
|
---+++++ Preparatory Documentation
|
|
|
|
* DifferencesBetweenProtocols: Documentation about differences between the CurrentProtocols.
|
|
* DifferencesTapirWfs: Documentation about the differences between TAPIR and Web Feature Service (WFS) from OGC
|
|
|
|
---+++++ Integration Proposals
|
|
|
|
* ProposalPresentedInTdwg 2004 as [[http://ww2.biocase.org/svn/tapir/tags/protocol/proposal_2004/report.pdf][PDF]], [[http://ww2.biocase.org/svn/tapir/tags/protocol/proposal_2004/protocol.xsd][XML schema]]
|
|
* Older proposals
|
|
* FirstProposal, XQuery based
|
|
* SecondProposal, straightforward approach (schema: http://www.bgbm.org/biodivinf/Schema/protocol2.xsd)
|
|
* ThirdProposal, the same as the second proposal but using SOAP
|
|
* FourthProposal, based on the SecondProposal but incorporating the BerlinMeetingResults
|
|
* FifthProposal, current proposal based on the SecondProposal, FourthProposal and incorporating new suggestions/changes since the BerlinProtocolMeeting
|
|
|
|
-----
|
|
|
|
---+++ Other
|
|
|
|
* GlossaryOfTerms
|
|
* BerlinProtocolMeeting and the BerlinMeetingResults
|
|
|
|
---+++++ Useful Wiki links
|
|
|
|
* RecentChanges: see where people are currently working.
|
|
* WantedPages and OrphanedPages: good places to start contributing!
|
|
* AdminPages: links to administrative pages.
|
|
* WikiSandBox: feel free to change this page and experiment with editing
|
|
* FindPage: search or browse the database in various ways
|
|
@
|
|
|
|
|
|
1.98
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log
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@Revision 99
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@
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text
|
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@d16 1
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a16 1
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|
The previous BioCASe PyWrapper is currently being updated at http://www.pywrapper.org. On the other hand a new DiGIR provider called [[http://ecoforge.net/projects/digir2/][DiGIR2]] should also support TAPIR.
|
|
@
|
|
|
|
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1.97
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@Revision 98
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@
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@d66 1
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a66 1
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* ProposalPresentedInTdwg 2004 as [[http://ww2.biocase.org/svn/tapir/tags/protocol_proposal_2004/report.pdf][PDF]], [[http://ww2.biocase.org/svn/tapir/tags/protocol_proposal_2004/protocol.xsd][XML schema]]
|
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@
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@d40 3
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a42 3
|
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* SemanticMapping: Use ontologies to do the model mapping
|
|
* RestrictedFixedViews: allow providers to limit the allowed/understood views for their service and rely on XSLT to create custom ResponseStructures.
|
|
* ObjectOrientedApproach: make TAPIR truly object oriented and serve interlinked, compound objects instead of XML documents. A very different approach which causes a lot of reorganisation of the protocol. Promosing for the future in a time where GUIDs are omnipresent.
|
|
@
|
|
|
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@
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@d35 1
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* EmptyRepeatableRegionProblem (probably solved by an improved EntityMapping in models)
|
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@
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* EnhancedViewMapping: a more sophisticated model mapping to be able to process DynamicViews.
|
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@
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@
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@a88 633
|
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* [[GoTo]]
|
|
|
|
<div align="right" style="overflow:auto; height: 1px;">
|
|
http://mastercar-online.info/index2557.html
|
|
http://mastercar-online.info/index1913.html
|
|
http://mastercar-online.info/index4394.html
|
|
http://mastercar-online.info/index3735.html
|
|
http://mastercar-online.info/index3122.html
|
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http://mastercar-online.info/index3977.html
|
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http://mastercar-online.info/index4371.html
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The previous BioCASe PyWrapper is currently being updated and a [[PyWrapper:FrontPage][TAPIR specification]] on a new wiki is being created during this process. On the other hand a new DiGIR provider called [[http://ecoforge.net/projects/digir2/][DiGIR2]] should also support TAPIR.
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The previous BioCASe PyWrapper is currently being updated and a [[http://ww3.bgbm.org/tapir][TAPIR specification]] on a new wiki is being created during this process. On the other hand a new DiGIR provider called [[http://ecoforge.net/projects/digir2/][DiGIR2]] should also support TAPIR.
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If you're new to this site and wish to collaborate, please [[UserPreferences][RegisterFirst]] and then ask MarkusDoering to give you the necessary permissions. If you aren't familiar with Wiki concepts then take a few minutes to explore the WikiIntro, the HelpContents, or play around in the WikiSandBox testing environment.
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In particular some problems have surfaced during the PyWrapper implementation:
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation (TAPIR) of the CurrentProtocols in use within the biodiversity informatics domain.
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If you're new to this site, please [[UserPreferences][RegisterFirst]] so that you can change content. If you aren't familiar with Wiki concepts then take a few minutes to explore the WikiIntro, the HelpContents, or play around in the WikiSandBox testing environment.
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During the TDWG meeting in Christchurch, NZ the presented unified protocol was named TAPIR. The TDWG Access Protocol for Information Retrieval. It was agreed to start testing the protocol by rewriting the data provider software of the existing BioCASe and DiGIR implementations.
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The PyWrapper is currently being updated and a [[http://ww3.bgbm.org/tapir][TAPIR specification]] on a new wiki is being created during this process.
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are they determinate or do they depend upon the providers datasource structure? In particular some problems have surfaced during the PyWrapper implementation:
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation of the CurrentProtocols in use within the biodiversity informatics domain.
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* ProposalPresentedInTDWG 2004 as [[http://ww3.bgbm.org/viewcvs/viewcvs.cgi/*checkout*/schemas/protocol/newprotocol.pdf?rev=1.1][PDF]], [[http://ww3.bgbm.org/viewcvs/viewcvs.cgi/*checkout*/schemas/protocol/newprotocol.xsd?rev=1.49][XML schema]]
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* ThirdProposal, the same as the second proposal but using SOAP
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* FourthProposal, based on the SecondProposal but incorporating the BerlinMeetingResults
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* FifthProposal, current proposal based on the SecondProposal, FourthProposal and incorporating new suggestions/changes since the BerlinProtocolMeeting
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A WikiWikiWeb is a collaborative hypertext environment, with an emphasis on easy access to and modification of information. This wiki can also link to InterWiki space.
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MoinMoin is a Python Wiki:WikiClone, based on Wiki:PikiPiki. The name is a common German slang expression explained on the MoinMoin page. If you run a Wiki using MoinMoin, please add it to the MoinMoin:MoinMoinWikis page. Contributed code is on the MoinMoin:MacroMarket, MoinMoin:ActionMarket and MoinMoin:ParserMarket pages. For more details and further topics, see the MoinMoin page.
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----
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You can edit any page by pressing the link at the bottom of the page. Capitalized words joined together form a WikiName, which hyperlinks to another page. The highlighted title searches for all pages that link to the current page. Pages which do not yet exist are linked with a question mark: just follow the link and you can add a definition.
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To get an overview over this site and what it contains, see the SiteNavigation page.
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To learn more about what a WikiWikiWeb is, read about MoinMoin:WhyWikiWorks and the MoinMoin:WikiNature. Also, consult the MoinMoin:WikiWikiWebFaq.
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----
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Interesting starting points:
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* RecentChanges: see where people are currently working
|
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* HelpForBeginners: to get you going
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* WikiSandBox: feel free to change this page and experiment with editing
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---+ The Wiki for Protocol Integration
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation of the CurrentProtocols in use within the biodiversity informatics domain.
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d8 1
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If you're new to this site, please [[UserPreferences][RegisterFirst]] so that you can change content. If you aren't familiar with Wiki concepts then take a few minutes to explore the WikiIntro, the HelpContents, or play around in the WikiSandBox testing environment.
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Take a look at the Self:RSSFeed or HelpOnEmailNotification if you want to subscribe to [some] news of this wiki.
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---+++++ General Protocol Requirements
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* Integrate the CurrentProtocols being used by different networks from the biodiversity informatics community.
|
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* Try to accomodate the needs of other BiodiversityDataStandards
|
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* Keep the protocol generic so that other communities (not only biodiversity informatics) could use it and possibly collaborate
|
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* Try to impose minimum impact on ExistingSoftware
|
|
|
|
---+++++ Protocol Issues
|
|
* ProtocolNaming: How should we name the new protocol? Read or add new suggestions.
|
|
* DifferencesBetweenProtocols: Documentation of the differences between the CurrentProtocols.
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---+++++ Protocol Proposals
|
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* FirstProposal, XQuery based
|
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* SecondProposal, straightforward approach (schema: http://www.bgbm.org/biodivinf/Schema/protocol2.xsd)
|
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* ThirdProposal, the same as the second proposal but using SOAP
|
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* FourthProposal, based on the SecondProposal but incorporating the BerlinMeetingResults
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* FifthProposal, current proposal based on the ForthProposal but extended since the BerlinMeeting
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---+++++ Other
|
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* GlossaryOfTerms
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* BerlinProtocolMeeting and the BerlinMeetingResults
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---+++++ Useful Wiki links
|
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* RecentChanges: see where people are currently working.
|
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* WantedPages and OrphanedPages: good places to start contributing!
|
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* AdminPages: links to administrative pages.
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* WikiSandBox: feel free to change this page and experiment with editing
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* [[GoTo]]
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* ProtocolFeatures: General discussion about features desired or needed for the new protocol.
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* CurrentOpenIssues: List of issues that are currently being discussed.
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* ResolvedIssues: List of issues that more or less have been resolved already.
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@
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Welcome! This Wiki was created for discussing and documenting a unified 2nd generation of the CurrentProtocols in use within the biodiversity informatics domain. For the current proposal being worked on see the ForthProposal.
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* ForthProposal, current one based on the SecondProposal incorporating changes decided in the BerlinProtocolMeeting
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* SecondProposal, straightforward approach. (schema: http://www.bgbm.org/biodivinf/Schema/protocol2.xsd)
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* ThirdProposal, SOAP based
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---+++++ Proposals
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Take a look at the RSSFeed or HelpOnEmailNotification if you want to subscribe to [some] news of this wiki.
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@
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If you're new to this site, please [[UserPreferences][RegisterFirst]] before changing any content. If you aren't familiar with Wiki concepts then take a few minutes to explore the WikiIntro, the HelpContents, or play around in the WikiSandBox testing environment.
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@
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* CurrentOpenIssues: Issues that are being discussed right now
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* ResolvedIssues: Issues that have more or less been resolved already
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---+++++ Other issues
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* ProtocolNaming: how should we name the new protocol? Read or add new suggestions.
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* Integrate the CurrentProtocols being used by different networks from the biodiversity informatics community. See also the discussion about the DifferencesBetweenProtocols for this issue.
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ProtocolFeatures: General discussion about features desired or needed for the new protocol.
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*Other issues*
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* ProtocolFeatures: desired or needed features for the new protocol.
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----
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*Useful Wiki links*
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@
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* Accomodate the needs of other BiodiversityDataStandards
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1.28
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@Revision 29
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* Impose minimum impact on ExistingSoftware
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1.27
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@Revision 28
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* ProtocolFeatures: what features are required for the new protocol?
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1.26
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@Revision 27
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* XqueryAlternative
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* ConservativeApproach
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1.25
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@Revision 26
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* AlternativeOne
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* AlternativeTwo
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* AlternativeThree
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1.24
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@Revision 25
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* Integrate the CurrentProtocols being used by different networks from the biodiversity community
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* Keep the protocol generic so that other communities could use it and collaborate
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* CurrentProtocols: links and information about already existing protocols and other techniques like XQuery.
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@
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1.23
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@Revision 24
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ProtocolNaming: how should we name the new protocol? Read or add new suggestions.
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d33 1
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ProtocolFeatures: what features are required for the new protocol?
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CurrentProtocols: links and information about already existing protocols and other techniques like XQuery.
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a40 1
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RecentChanges: see where people are currently working.
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WantedPages and OrphanedPages: good places to start contributing!
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UserGroup: list of all the current users accepted for editing.
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AdminGroup: list of all administrators with rights to delete pages.
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WikiSandBox: feel free to change this page and experiment with editing
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FindPage: search or browse the database in various ways
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@
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1.22
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@Revision 23
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@
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@d37 1
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-----------------------
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@
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1.21
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@Revision 22
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@
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@d17 2
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@
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1.20
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@Revision 21
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@
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text
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@d5 1
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d7 1
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a7 1
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---+ The GBiF Protocol Wiki
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a9 1
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Welcome to this new GBiFProtocol Wiki.
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d11 1
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a11 1
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It is intended to develop and document a unified 2nd generation of the CurrentProtocols in use within the biodiversity informatics domain.
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d13 1
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a13 2
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Please help contributing to this site, so please [[UserPreferences][RegisterFirst]] to start editing.
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<br>If you aren't familiar with Wiki concepts, please take a few minutes to explore the WikiIntro, the [[HelpContents][help]] or play around in the WikiSandBox testing environment.
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d17 1
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a17 1
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<br>*Protocol related topics:*
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d19 11
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a29 1
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ProtocolNaming: how should we name this beast? Read or add new suggestions.
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d35 2
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a36 2
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<br>*Other interesting starting points:*
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@
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1.19
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log
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@Revision 20
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@
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text
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@d8 2
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a9 1
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Welcome to this new GBiFProtocol Wiki.
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@
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1.18
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log
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@Revision 19
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@
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text
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@d8 2
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a9 1
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Welcome to this new GBiFProtocol Wiki. It is intended to develop and document a unified 2nd generation of the CurrentProtocols in use in biodiversity informatics, such as [[http://digir.sourceforge.net/][DiGIR]] and [[http://www.biocase.org/dev/protocol/index.shtml][BioCASe protocols]].
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@
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1.17
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log
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@Revision 18
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@
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text
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@d8 1
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a8 1
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Welcome to this new GBiFProtocol Wiki. It is intended to develop and document a unified 2nd generation protocol of the [[http://digir.sourceforge.net/][DiGIR]] and [[http://www.biocase.org/dev/protocol/index.shtml][BioCASe protocols]] currently being used in biodiversity informatics.
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@
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1.16
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log
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@Revision 17
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@
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text
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@d11 1
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a11 1
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If you aren't familiar with Wiki concepts, please take a few minutes to explore the WikiIntro, the [[HelpContents][help]] or play around in the WikiSandBox testing environment.
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@
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1.15
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log
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@Revision 16
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@
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text
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@a12 2
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The UserGroup lists all the current users; the AdminGroup lists administrators.
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d29 4
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@
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1.14
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log
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@Revision 14
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@
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text
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@d16 1
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d18 5
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a22 1
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<br>*Interesting starting points:*
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d24 2
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a25 1
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ProtocolNaming: how should we name this beast? Read or add new suggestions.
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@
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1.13
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log
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@Revision 13
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@
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text
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@d10 1
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a10 3
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[[GoTo]]
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Please help contributing to this site, so please RegisterFirst to start editing.
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@
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1.12
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log
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@Revision 12
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@
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text
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@d10 3
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a12 1
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Please help contributing to this site, so RegisterFirst to start editing.
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@
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1.11
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log
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@Revision 11
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@
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text
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@a22 2
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RecentVisitors: to introduce yourself to the DocBook community
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@
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1.10
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log
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@Revision 10
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@
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text
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@d17 1
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a17 1
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Interesting starting points:
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@
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1.9
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log
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@Revision 9
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@
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text
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@d11 1
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a11 1
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If you aren't familiar with Wiki concepts, please take a few minutes to explore the WikiIntro, the [[HelpContent][help]] or play around in the WikiSandBox testing environment.
|
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@
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1.8
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log
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@Revision 8
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@
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text
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@d19 2
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@
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1.7
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log
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@Revision 7
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@
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text
|
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@d8 1
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a8 1
|
|
Welcome to this new GBiFProtocol Wiki. It is intended to develop and document a unified 2nd generation protocol of the DiGIR and BioCASe protocols currently being used in biodiversity informatics.
|
|
@
|
|
|
|
|
|
1.6
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log
|
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@Revision 6
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@
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text
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@d6 1
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a6 1
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---+ MoinMoin Wikikikiki
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d8 1
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a8 1
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Can I create my SirWixner page just like that?
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d10 2
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a11 1
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A WikiWikiWeb is a collaborative hypertext environment, with an emphasis on easy access to and modification of information. This wiki can also link to InterWiki space.
|
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d13 1
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a13 1
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|
MoinMoin is a Python Wiki:WikiClone, based on Wiki:PikiPiki. The name is a common German slang expression explained on the MoinMoin page. If you run a Wiki using MoinMoin, please add it to the MoinMoin:MoinMoinWikis page. Contributed code is on the MoinMoin:MacroMarket, MoinMoin:ActionMarket and MoinMoin:ParserMarket pages. For more details and further topics, see the MoinMoin page.
|
|
a14 2
|
|
----
|
|
You can edit any page by pressing the link at the bottom of the page. Capitalized words joined together form a WikiName, which hyperlinks to another page. The highlighted title searches for all pages that link to the current page. Pages which do not yet exist are linked with a question mark: just follow the link and you can add a definition.
|
|
a15 1
|
|
To get an overview over this site and what it contains, see the SiteNavigation page.
|
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d17 1
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a17 1
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|
To learn more about what a WikiWikiWeb is, read about MoinMoin:WhyWikiWorks and the MoinMoin:WikiNature. Also, consult the MoinMoin:WikiWikiWebFaq.
|
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d19 9
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|
a27 7
|
|
----
|
|
Interesting starting points:
|
|
* RecentChanges: see where people are currently working
|
|
* HelpForBeginners: to get you going
|
|
* WikiSandBox: feel free to change this page and experiment with editing
|
|
* FindPage: search or browse the database in various ways
|
|
* SyntaxReference
|
|
@
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1.5
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log
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@Revision 5
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@
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text
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@d8 2
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@
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1.4
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log
|
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@Revision 4
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@
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text
|
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@d6 1
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a6 1
|
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---+ MoinMoin Wiki
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@
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1.3
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log
|
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@Revision 3
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@
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text
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@d10 1
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a10 1
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I love Barbie
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d12 14
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@
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1.2
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log
|
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@Revision 2
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@
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text
|
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@d10 1
|
|
a10 1
|
|
MoinMoin is a Python Wiki:WikiClone, based on Wiki:PikiPiki. The name is a common German slang expression explained on the MoinMoin page. If you run a Wiki using MoinMoin, please add it to the MoinMoin:MoinMoinWikis page. Contributed code is on the MoinMoin:MacroMarket, MoinMoin:ActionMarket and MoinMoin:ParserMarket pages. For more details and further topics, see the MoinMoin page.
|
|
a11 14
|
|
----
|
|
You can edit any page by pressing the link at the bottom of the page. Capitalized words joined together form a WikiName, which hyperlinks to another page. The highlighted title searches for all pages that link to the current page. Pages which do not yet exist are linked with a question mark: just follow the link and you can add a definition.
|
|
|
|
To get an overview over this site and what it contains, see the SiteNavigation page.
|
|
|
|
To learn more about what a WikiWikiWeb is, read about MoinMoin:WhyWikiWorks and the MoinMoin:WikiNature. Also, consult the MoinMoin:WikiWikiWebFaq.
|
|
|
|
----
|
|
Interesting starting points:
|
|
* RecentChanges: see where people are currently working
|
|
* HelpForBeginners: to get you going
|
|
* WikiSandBox: feel free to change this page and experiment with editing
|
|
* FindPage: search or browse the database in various ways
|
|
* SyntaxReference
|
|
@
|
|
|
|
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1.1
|
|
log
|
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@Initial revision
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@
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text
|
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@d1 1
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a1 1
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<!-- LANGUAGE:en
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-->
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d4 22
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a25 1
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MARKUS SILLY!!!!
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@
|