587 lines
21 KiB
XML
587 lines
21 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<!-- TaxonX Version 1.0
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Editors: Terry Catapano
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Donat Agosti
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Prepared as part of NSF Funded Project:
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Collaborative Research: Development of New Digital Library Applications
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in the Context of a Basic Ontology for Biosystematics Information Using the
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Literature of Entomology (Ants)
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NSF #241229, 4/1/2004 - 2/28/2007
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Chrise Stephenson (PI)
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-->
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<!-- REVISION HISTORY -->
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<!-- 2005-08-01
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TaxonX version 1.0
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Drew Koning & TC
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-->
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<!-- TC
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2006-01-02:
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add rank attribute to treatment
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remove rank attribute from div
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add figure to div and treatment
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add optional head as first child of div
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2006-01-12
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treatment now recursive
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-->
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<!-- TC
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2006-01-17
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added xid (external identifier) to name to include identifiers for taxa in external systems such as ITIS or HNS
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added name to p
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-->
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<!-- TC
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2006-02-13
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added head, figure, note, and pb to content model of ref_group
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-->
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<!-- TC
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2006-06-06
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added statement
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-->
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<!-- TC
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2006-06-08
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added name attribute to character
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-->
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<!-- TC
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2007-01-07
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added pb to cite; xid to cite, character, state.
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-->
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<!-- TC
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2007-01-11
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added figure and pb to content model of figures
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created standardAttrs (id and n) group included in all content models.
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Added to pb and figure to most elements
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-->
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<!-- TC
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2007-01-21
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added head to treatment
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-->
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<!-- TC
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2007-01-24
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changed namespace of schema to http://www.taxonx.org/schema/v1
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added othertype attribute to div; added othertype as value of type attribute of div.
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created element bibref to replace citation in ref_group
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-->
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<!-- TC
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2007-01-28
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added elements to content model of citation
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made type and type_loc global elements (temporarily)
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-->
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<!-- TC
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2007-01-31
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added bibref to nomenclature
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-->
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<!-- TC
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2007-04-24
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added treatment to note
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-->
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<xs:schema targetNamespace="http://www.taxonx.org/schema/v1" elementFormDefault="qualified"
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xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://www.taxonx.org/schema/v1"
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xmlns:dc="http://digir.net/schema/conceptual/darwin/core/2.0" xmlns:mods="http://www.loc.gov/mods/v3">
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<xs:import namespace="http://www.loc.gov/mods/v3" schemaLocation="http://www.loc.gov/standards/mods/v3/mods-3-1.xsd"/>
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<xs:import namespace="http://digir.net/schema/conceptual/darwin/2003/1.0"
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schemaLocation="http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd"/>
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<xs:element name="taxonx">
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<xs:annotation>
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<xs:documentation>Contains a single taxonX document, including a taxonxHeader and taxonxBody</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:sequence>
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<xs:element ref="taxonxHeader"/>
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<xs:element ref="taxonxBody"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<xs:element name="taxonxHeader">
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<xs:annotation>
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<xs:documentation>Contains identification and description of the taxonx document and its source, expressed in the
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Metadata Object Description Standard (MODS).</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:choice>
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<xs:any namespace="http://www.loc.gov/mods/v3"/>
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</xs:choice>
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</xs:complexType>
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</xs:element>
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<xs:element name="taxonxBody">
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<xs:annotation>
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<xs:documentation>Contains a single text including at least one taxonomic treatment.</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="div"/>
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<xs:element ref="head"/>
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<xs:element ref="treatment"/>
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<xs:element ref="note"/>
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<xs:element ref="ref_group"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="author" type="xs:string">
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<xs:annotation>
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<xs:documentation>The author of the original description of a taxon in a nomenclature or synonymy section of a
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taxonomic treatment.</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="citation">
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<xs:annotation>
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<xs:documentation>A citation.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="xmldata"/>
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<xs:element ref="xid"/>
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<xs:element ref="pb"/>
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<xs:element ref="nomenclature"/>
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<xs:element ref="collection_event"/>
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<xs:element ref="locality"/>
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<xs:element ref="note"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="type" type="xs:string" use="optional"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="div">
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<xs:annotation>
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<xs:documentation>A block level textual division of a text. Attributes: n, number or name of division; type: type
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of division. If div occurs inside a treatment, suggested values are: abstract, acknowledgments, biology_ecology,
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description, diagnosis, discussion, distribution, etymology, introduction, materials_examined,
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materials_methods, multiple, synopsis.</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:sequence maxOccurs="1">
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<xs:element ref="head" maxOccurs="1" minOccurs="0"/>
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="p"/>
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<xs:element ref="div"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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</xs:sequence>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="type" use="optional">
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<xs:simpleType>
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<xs:restriction base="xs:string">
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<xs:enumeration value="abstract"/>
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<xs:enumeration value="acknowledgments"/>
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<xs:enumeration value="biology_ecology"/>
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<xs:enumeration value="description"/>
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<xs:enumeration value="diagnosis"/>
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<xs:enumeration value="discussion"/>
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<xs:enumeration value="distribution"/>
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<xs:enumeration value="etymology"/>
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<xs:enumeration value="key"/>
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<xs:enumeration value="introduction"/>
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<xs:enumeration value="materials_examined"/>
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<xs:enumeration value="materials_methods"/>
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<xs:enumeration value="multiple"/>
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<xs:enumeration value="synopsis"/>
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<xs:enumeration value=""/>
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</xs:restriction>
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</xs:simpleType>
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</xs:attribute>
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</xs:complexType>
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</xs:element>
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<xs:element name="head">
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<xs:annotation>
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<xs:documentation>A heading, such as the title of a section, etc...</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="author"/>
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<xs:element ref="note"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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<xs:element name="title" type="xs:string"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="type" type="xs:string" use="optional"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="name">
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<xs:annotation>
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<xs:documentation>A scientific name of a taxon as it appears in the source text.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="xmldata"/>
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<xs:element ref="xid"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="note">
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<xs:annotation>
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<xs:documentation>A note, such as a footnote or endnote, in the source text. Use the place attribute to indicate
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the placement of the note in the source document (e.g., "foot", "end"). Use the n attribute to contain the
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number or symbol used to label the note in the source text.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="treatment"/>
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<xs:element ref="note"/>
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<xs:element ref="figure"/>
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<xs:element ref="p"/>
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<xs:element ref="pb"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="place" type="xs:string"/>
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<xs:attribute name="resp" type="xs:string"/>
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<xs:attribute name="type" type="xs:string"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="p">
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<xs:annotation>
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<xs:documentation>A paragraph or other textual block.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="collection_event"/>
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<xs:element ref="locality"/>
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<xs:element ref="xmldata"/>
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<xs:element ref="character"/>
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<xs:element ref="name"/>
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<xs:element ref="figure"/>
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<xs:element ref="note"/>
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<xs:element ref="pb"/>
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<xs:element ref="seg"/>
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<xs:element ref="nomenclature"/>
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<!-- <xs:element ref="xmldata"/> -->
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="ref_group">
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<xs:annotation>
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<xs:documentation>A group of bibliographic references.</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:sequence maxOccurs="1">
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<xs:element ref="head" maxOccurs="1" minOccurs="0"/>
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="bibref"/>
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<xs:element ref="ref_group"/>
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<xs:element ref="figure"/>
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<xs:element ref="note"/>
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<xs:element ref="pb"/>
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</xs:choice>
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</xs:sequence>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="nomenclature">
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<xs:annotation>
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<xs:documentation>The heading of a taxonomic treatment containing the scientific name of the taxon
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described.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="author"/>
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<xs:element ref="citation"/>
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<xs:element ref="figures"/>
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<xs:element ref="name"/>
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<xs:element ref="bibref"/>
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<xs:element ref="pb"/>
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<xs:element name="status" type="xs:string"/>
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<xs:element name="synonomy">
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<xs:complexType>
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<xs:sequence maxOccurs="unbounded">
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<xs:element ref="name"/>
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<xs:element ref="author" minOccurs="0" maxOccurs="unbounded"/>
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<xs:element ref="year" minOccurs="0" maxOccurs="unbounded"/>
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<xs:element ref="citation" minOccurs="0" maxOccurs="unbounded"/>
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<xs:element ref="note" minOccurs="0" maxOccurs="unbounded"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<xs:element ref="type"/>
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<xs:element ref="type_loc"/>
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<xs:element ref="xmldata"/>
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<xs:element ref="year"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="type">
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<xs:annotation>
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<xs:documentation>Taxonomic type</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:sequence>
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<xs:element ref="name"/>
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<xs:element ref="author"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<xs:element name="type_loc" type="xs:string">
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<xs:annotation>
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<xs:documentation>Location of Taxonomic Type</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="year">
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<xs:annotation>
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<xs:documentation>A year in a citation of a document, a scientfic name, or a specimen.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="seg">
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<xs:annotation>
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<xs:documentation>Segment. A phrase-level segment of text.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="character"/>
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<xs:element ref="collection_event"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attribute name="type" use="optional">
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<xs:simpleType>
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<xs:restriction base="xs:string">
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<xs:enumeration value="biology_ecology"/>
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<xs:enumeration value="collection_data"/>
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<xs:enumeration value="description"/>
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<xs:enumeration value="diagnosis"/>
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<xs:enumeration value="discussion"/>
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<xs:enumeration value="distribution"/>
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<xs:enumeration value="etymology"/>
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<xs:enumeration value="key"/>
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<xs:enumeration value="materials_examined"/>
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<xs:enumeration value="synopsis"/>
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<xs:enumeration value=""/>
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</xs:restriction>
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</xs:simpleType>
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</xs:attribute>
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<xs:attribute name="sub_type" type="xs:string" use="optional"/>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="xmldata">
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<xs:annotation>
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<xs:documentation>A wrapper element used to include data from an external schema.</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:choice maxOccurs="unbounded">
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<xs:any namespace="http://digir.net/schema/conceptual/darwin/2003/1.0"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="treatment">
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<xs:annotation>
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<xs:documentation>A taxonomic treatment</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:sequence maxOccurs="1">
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<xs:element ref="head" maxOccurs="1" minOccurs="0"/>
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<xs:choice maxOccurs="unbounded">
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<xs:element ref="nomenclature"/>
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<xs:element ref="div"/>
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<xs:element ref="ref_group"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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<xs:element ref="treatment"/>
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</xs:choice>
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</xs:sequence>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="rank" use="optional">
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<xs:simpleType>
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<xs:restriction base="xs:string">
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<xs:enumeration value="order"/>
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<xs:enumeration value="family"/>
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<xs:enumeration value="species"/>
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<xs:enumeration value="genus"/>
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<xs:enumeration value="subspecies"/>
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<xs:enumeration value="superfamily"/>
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<xs:enumeration value="suborder"/>
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<xs:enumeration value="subfamily"/>
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<xs:enumeration value="infrasubspecific"/>
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</xs:restriction>
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</xs:simpleType>
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</xs:attribute>
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</xs:complexType>
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</xs:element>
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<xs:element name="character">
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<xs:annotation>
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<xs:documentation>A morphological character.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="xid"/>
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<xs:element ref="xmldata"/>
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<xs:element ref="character"/>
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<xs:element ref="state"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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<xs:attribute name="name">
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<xs:simpleType>
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<xs:restriction base="xs:string"/>
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</xs:simpleType>
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</xs:attribute>
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</xs:complexType>
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</xs:element>
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<xs:element name="collection_event">
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<xs:annotation>
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<xs:documentation>Contains information regarding the collection of a specimen.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="locality"/>
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<xs:element ref="type"/>
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<xs:element ref="type_loc"/>
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<xs:element ref="xid"/>
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<xs:element ref="xmldata"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="state">
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<xs:annotation>
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<xs:documentation>A character state.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="xid"/>
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<xs:element ref="xmldata"/>
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<xs:element ref="pb"/>
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<xs:element ref="figure"/>
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</xs:choice>
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<xs:attributeGroup ref="standardAttrs"/>
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</xs:complexType>
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</xs:element>
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<xs:element name="locality">
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<xs:annotation>
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<xs:documentation>A geographical location.</xs:documentation>
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</xs:annotation>
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<xs:complexType mixed="true">
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<xs:choice minOccurs="0" maxOccurs="unbounded">
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<xs:element ref="xid"/>
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<xs:element ref="xmldata"/>
|
|
<xs:element ref="pb"/>
|
|
<xs:element ref="figure"/>
|
|
</xs:choice>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="xid">
|
|
<xs:annotation>
|
|
<xs:documentation>External identifier. A pointer to an indentifer assigned to the parent object in an external can
|
|
be found; has attributes "identifier", the identifier being related to the content marked up by the xid's parent
|
|
element, "source" the source of the identifer (e.g., database), "type", and "uri" a uniform resource.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType mixed="true">
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
<xs:attribute name="identifier"/>
|
|
<xs:attribute name="source"/>
|
|
<xs:attribute name="type"/>
|
|
<xs:attribute name="uri" type="xs:anyURI"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="statement">
|
|
<xs:annotation>
|
|
<xs:documentation>Descriptive statement</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType mixed="true">
|
|
<xs:choice minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element ref="character"/>
|
|
<xs:element ref="pb"/>
|
|
<xs:element ref="figure"/>
|
|
</xs:choice>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="figures">
|
|
<xs:annotation>
|
|
<xs:documentation>Figures: A statement indicating figures associated with a treatment.</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType mixed="true">
|
|
<xs:choice minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element ref="figure"/>
|
|
<xs:element ref="pb"/>
|
|
</xs:choice>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
|
|
<xs:element name="pb">
|
|
<xs:annotation>
|
|
<xs:documentation>Page break. Indicates the point in the source text where a new page begins. Use the n attribute
|
|
to record number of the new page; use the url attribute to lnk to an electronic graphical representation of the
|
|
page. </xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
<xs:attribute name="url" type="xs:anyURI" use="optional"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="figure">
|
|
<xs:annotation>
|
|
<xs:documentation>A figure or graphic</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:choice minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element name="figDesc">
|
|
<xs:complexType mixed="true">
|
|
<xs:choice minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element ref="note"/>
|
|
<xs:element ref="figure"/>
|
|
<xs:element ref="pb"/>
|
|
</xs:choice>
|
|
<xs:attribute name="id" type="xs:ID"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element ref="head"/>
|
|
<xs:element ref="p"/>
|
|
<xs:element ref="pb"/>
|
|
</xs:choice>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
<xs:attribute name="url" type="xs:anyURI" use="optional"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="bibref">
|
|
<xs:annotation>
|
|
<xs:documentation>A bibliographic reference.</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType mixed="true">
|
|
<xs:choice minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element ref="xmldata"/>
|
|
<xs:element ref="xid"/>
|
|
<xs:element ref="pb"/>
|
|
<xs:element ref="figure"/>
|
|
</xs:choice>
|
|
<xs:attributeGroup ref="standardAttrs"/>
|
|
<xs:attribute name="type" type="xs:string" use="optional"/>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:attributeGroup name="standardAttrs">
|
|
<xs:attribute name="id" type="xs:ID"/>
|
|
<xs:attribute name="n" type="xs:string"/>
|
|
</xs:attributeGroup>
|
|
</xs:schema>
|