212 lines
10 KiB
XML
212 lines
10 KiB
XML
<nex:nexml generator="Bio::Phylo::Project v.0.21_1265" version="0.9" xmlns="http://www.nexml.org/2009" xmlns:nex="http://www.nexml.org/2009" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/2009 http://www.nexml.org/2009/nexml.xsd">
|
|
<otus id="otus1">
|
|
<otu about="#otu2" id="otu2" label="Mus_musculus_CAA25899.1">
|
|
<meta href="http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481174" id="meta1" rel="skos:closeMatch" xsi:type="nex:ResourceMeta"/>
|
|
<meta content="Mus Musculus" datatype="xsd:string" id="meta2" property="skos:altLabel" xsi:type="nex:LiteralMeta"/>
|
|
</otu>
|
|
<otu id="otu3" label="Rattus_norvegicus_AAA21711.1">
|
|
<meta href="http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343" id="meta3" rel="skos:closeMatch" xsi:type="nex:ResourceMeta"/>
|
|
<meta content="Rattus norvegicus" datatype="xsd:string" id="meta4" property="skos:altLabel" xsi:type="nex:LiteralMeta"/>
|
|
</otu>
|
|
<otu id="otu4" label="Gallus_gallus_CAA25046.1">
|
|
<meta href="http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:3854553" id="meta5" rel="skos:closeMatch" xsi:type="nex:ResourceMeta"/>
|
|
<meta content="Gallus gallus" datatype="xsd:string" id="meta6" property="skos:altLabel" xsi:type="nex:LiteralMeta"/>
|
|
</otu>
|
|
<otu id="otu5" label="Rattus_norvegicus_AAA41015.1">
|
|
<meta href="http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343" id="meta7" rel="skos:closeMatch" xsi:type="nex:ResourceMeta"/>
|
|
<meta content="Rattus norvegicus" datatype="xsd:string" id="meta8" property="skos:altLabel" xsi:type="nex:LiteralMeta"/>
|
|
</otu>
|
|
</otus>
|
|
<trees id="trees12" otus="otus1">
|
|
<tree id="tree14" label="con_50_majrule" xsi:type="nex:FloatTree">
|
|
<node id="node15" root="true"/>
|
|
<node id="node16"/>
|
|
<node id="node19"/>
|
|
<node id="node17" label="Mus_musculus_CAA25899.1" otu="otu2"/>
|
|
<node id="node18" label="Rattus_norvegicus_AAA21711.1" otu="otu3"/>
|
|
<node id="node20" label="Gallus_gallus_CAA25046.1" otu="otu4"/>
|
|
<node id="node21" label="Rattus_norvegicus_AAA41015.1" otu="otu5"/>
|
|
<edge id="edge16" length="0.024280" source="node15" target="node16"/>
|
|
<edge id="edge19" length="0.040335" source="node15" target="node19"/>
|
|
<edge id="edge17" length="0.008307" source="node16" target="node17"/>
|
|
<edge id="edge18" length="0.009662" source="node16" target="node18"/>
|
|
<edge id="edge20" length="0.055226" source="node19" target="node20"/>
|
|
<edge id="edge21" length="0.117358" source="node19" target="node21"/>
|
|
</tree>
|
|
</trees>
|
|
<characters id="characters6" otus="otus1" xsi:type="nex:ProteinCells">
|
|
<format id="format22">
|
|
<states id="states8">
|
|
<state id="s1" symbol="A"/>
|
|
<state id="s2" symbol="C"/>
|
|
<state id="s3" symbol="D"/>
|
|
<state id="s4" symbol="E"/>
|
|
<state id="s5" symbol="F"/>
|
|
<state id="s6" symbol="G"/>
|
|
<state id="s7" symbol="H"/>
|
|
<state id="s8" symbol="I"/>
|
|
<state id="s9" symbol="K"/>
|
|
<state id="s10" symbol="L"/>
|
|
<state id="s11" symbol="M"/>
|
|
<state id="s12" symbol="N"/>
|
|
<state id="s13" symbol="P"/>
|
|
<state id="s14" symbol="Q"/>
|
|
<state id="s15" symbol="R"/>
|
|
<state id="s16" symbol="S"/>
|
|
<state id="s17" symbol="T"/>
|
|
<state id="s18" symbol="U"/>
|
|
<state id="s19" symbol="V"/>
|
|
<state id="s20" symbol="W"/>
|
|
<state id="s21" symbol="X"/>
|
|
<state id="s22" symbol="Y"/>
|
|
<uncertain_state_set id="s23" symbol="B">
|
|
<member id="member24" state="s3"/>
|
|
<member id="member24" state="s12"/>
|
|
</uncertain_state_set>
|
|
<uncertain_state_set id="s24" symbol="Z">
|
|
<member id="member23" state="s4"/>
|
|
<member id="member23" state="s14"/>
|
|
</uncertain_state_set>
|
|
<uncertain_state_set id="s25" symbol="-"/>
|
|
<uncertain_state_set id="s26" symbol="?">
|
|
<member id="member24" state="s1"/>
|
|
<member id="member24" state="s2"/>
|
|
<member id="member24" state="s3"/>
|
|
<member id="member24" state="s4"/>
|
|
<member id="member24" state="s5"/>
|
|
<member id="member24" state="s6"/>
|
|
<member id="member24" state="s7"/>
|
|
<member id="member24" state="s8"/>
|
|
<member id="member24" state="s9"/>
|
|
<member id="member24" state="s10"/>
|
|
<member id="member24" state="s11"/>
|
|
<member id="member24" state="s12"/>
|
|
<member id="member24" state="s13"/>
|
|
<member id="member24" state="s14"/>
|
|
<member id="member24" state="s15"/>
|
|
<member id="member24" state="s16"/>
|
|
<member id="member24" state="s17"/>
|
|
<member id="member24" state="s18"/>
|
|
<member id="member24" state="s19"/>
|
|
<member id="member24" state="s20"/>
|
|
<member id="member24" state="s21"/>
|
|
<member id="member24" state="s22"/>
|
|
<member id="member24" state="s23"/>
|
|
<member id="member24" state="s24"/>
|
|
<member id="member24" state="s25"/>
|
|
</uncertain_state_set>
|
|
</states>
|
|
<char id="c1" states="states8"/>
|
|
<char id="c2" states="states8"/>
|
|
<char id="c3" states="states8"/>
|
|
<char id="c4" states="states8"/>
|
|
<char id="c5" states="states8"/>
|
|
<char id="c6" states="states8"/>
|
|
<char id="c7" states="states8"/>
|
|
<char id="c8" states="states8"/>
|
|
<char id="c9" states="states8"/>
|
|
<char id="c10" states="states8"/>
|
|
<char id="c11" states="states8"/>
|
|
<char id="c12" states="states8"/>
|
|
<char id="c13" states="states8"/>
|
|
<char id="c14" states="states8"/>
|
|
<char id="c15" states="states8"/>
|
|
<char id="c16" states="states8"/>
|
|
<char id="c17" states="states8"/>
|
|
<char id="c18" states="states8"/>
|
|
<char id="c19" states="states8"/>
|
|
<char id="c20" states="states8"/>
|
|
</format>
|
|
<matrix id="matrix24">
|
|
<row id="row7" label="Mus_musculus_CAA25899.1" otu="otu2">
|
|
<cell char="c1" id="cell23" state="s11"/>
|
|
<cell char="c2" id="cell23" state="s6"/>
|
|
<cell char="c3" id="cell23" state="s3"/>
|
|
<cell char="c4" id="cell23" state="s19"/>
|
|
<cell char="c5" id="cell23" state="s4"/>
|
|
<cell char="c6" id="cell23" state="s9"/>
|
|
<cell char="c7" id="cell23" state="s6"/>
|
|
<cell char="c8" id="cell23" state="s9"/>
|
|
<cell char="c9" id="cell23" state="s9"/>
|
|
<cell char="c10" id="cell23" state="s8"/>
|
|
<cell char="c11" id="cell23" state="s5"/>
|
|
<cell char="c12" id="cell23" state="s19"/>
|
|
<cell char="c13" id="cell23" state="s14"/>
|
|
<cell char="c14" id="cell23" state="s9"/>
|
|
<cell char="c15" id="cell23" state="s2"/>
|
|
<cell char="c16" id="cell23" state="s1"/>
|
|
<cell char="c17" id="cell23" state="s14"/>
|
|
<cell char="c18" id="cell23" state="s2"/>
|
|
<cell char="c19" id="cell23" state="s7"/>
|
|
<cell char="c20" id="cell23" state="s17"/>
|
|
</row>
|
|
<row id="row9" label="Rattus_norvegicus_AAA41015.1" otu="otu5">
|
|
<cell char="c1" id="cell23" state="s11"/>
|
|
<cell char="c2" id="cell23" state="s6"/>
|
|
<cell char="c3" id="cell23" state="s3"/>
|
|
<cell char="c4" id="cell23" state="s1"/>
|
|
<cell char="c5" id="cell23" state="s4"/>
|
|
<cell char="c6" id="cell23" state="s1"/>
|
|
<cell char="c7" id="cell23" state="s6"/>
|
|
<cell char="c8" id="cell23" state="s9"/>
|
|
<cell char="c9" id="cell23" state="s9"/>
|
|
<cell char="c10" id="cell23" state="s8"/>
|
|
<cell char="c11" id="cell23" state="s5"/>
|
|
<cell char="c12" id="cell23" state="s8"/>
|
|
<cell char="c13" id="cell23" state="s14"/>
|
|
<cell char="c14" id="cell23" state="s9"/>
|
|
<cell char="c15" id="cell23" state="s2"/>
|
|
<cell char="c16" id="cell23" state="s1"/>
|
|
<cell char="c17" id="cell23" state="s14"/>
|
|
<cell char="c18" id="cell23" state="s2"/>
|
|
<cell char="c19" id="cell23" state="s7"/>
|
|
<cell char="c20" id="cell23" state="s17"/>
|
|
</row>
|
|
<row id="row10" label="Gallus_gallus_CAA25046.1" otu="otu4">
|
|
<cell char="c1" id="cell23" state="s11"/>
|
|
<cell char="c2" id="cell23" state="s6"/>
|
|
<cell char="c3" id="cell23" state="s3"/>
|
|
<cell char="c4" id="cell23" state="s8"/>
|
|
<cell char="c5" id="cell23" state="s4"/>
|
|
<cell char="c6" id="cell23" state="s9"/>
|
|
<cell char="c7" id="cell23" state="s6"/>
|
|
<cell char="c8" id="cell23" state="s9"/>
|
|
<cell char="c9" id="cell23" state="s9"/>
|
|
<cell char="c10" id="cell23" state="s8"/>
|
|
<cell char="c11" id="cell23" state="s5"/>
|
|
<cell char="c12" id="cell23" state="s19"/>
|
|
<cell char="c13" id="cell23" state="s14"/>
|
|
<cell char="c14" id="cell23" state="s9"/>
|
|
<cell char="c15" id="cell23" state="s2"/>
|
|
<cell char="c16" id="cell23" state="s16"/>
|
|
<cell char="c17" id="cell23" state="s14"/>
|
|
<cell char="c18" id="cell23" state="s2"/>
|
|
<cell char="c19" id="cell23" state="s7"/>
|
|
<cell char="c20" id="cell23" state="s17"/>
|
|
</row>
|
|
<row id="row11" label="Rattus_norvegicus_AAA21711.1" otu="otu3">
|
|
<cell char="c1" id="cell23" state="s11"/>
|
|
<cell char="c2" id="cell23" state="s6"/>
|
|
<cell char="c3" id="cell23" state="s3"/>
|
|
<cell char="c4" id="cell23" state="s19"/>
|
|
<cell char="c5" id="cell23" state="s4"/>
|
|
<cell char="c6" id="cell23" state="s9"/>
|
|
<cell char="c7" id="cell23" state="s6"/>
|
|
<cell char="c8" id="cell23" state="s9"/>
|
|
<cell char="c9" id="cell23" state="s9"/>
|
|
<cell char="c10" id="cell23" state="s8"/>
|
|
<cell char="c11" id="cell23" state="s5"/>
|
|
<cell char="c12" id="cell23" state="s19"/>
|
|
<cell char="c13" id="cell23" state="s14"/>
|
|
<cell char="c14" id="cell23" state="s9"/>
|
|
<cell char="c15" id="cell23" state="s2"/>
|
|
<cell char="c16" id="cell23" state="s1"/>
|
|
<cell char="c17" id="cell23" state="s14"/>
|
|
<cell char="c18" id="cell23" state="s2"/>
|
|
<cell char="c19" id="cell23" state="s7"/>
|
|
<cell char="c20" id="cell23" state="s17"/>
|
|
</row>
|
|
</matrix>
|
|
</characters>
|
|
</nex:nexml>
|