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date 2008.07.02.03.09.01; author BobMorris; state Exp;
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@An InfoItems file with items moved from the SPeciesProfileModel file
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text
@<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="human.xsl"?>
<!-- $Rev: 1294 $ -->
<!-- $Date: 2007-08-15 15:05:50 +0200 (Wed, 15 Aug 2007) $ -->
<!-- $Author: MarkusDoering $ -->
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:base="http://rs.tdwg.org/ontology/Base#" xml:base="http://rs.tdwg.org/ontology/voc/SPMInfoItems"
xmlns="http://rs.tdwg.org/ontology/voc/SPMInfoItems#" xmlns:spmt="http://rs.tdwg.org/ontology/voc/SPMInfoItems#">
<owl:Ontology rdf:about="http://rs.tdwg.org/ontology/voc/SPMInfoItems">
<dc:title>TDWG Species Profile Model InfoItems Ontology</dc:title>
<dc:creator>Roger Hyam</dc:creator>
<dc:publisher>TDWG Biodiversity Information Standards</dc:publisher>
<dcterms:issued>2007-04-17</dcterms:issued>
<dcterms:modified>$Date: 2007-08-15 15:05:50 +0200 (Wed, 15 Aug 2007) $</dcterms:modified>
<dc:description>*Experimental* Ontology describing a controlled vocabulary for types of InfoItem.</dc:description>
<owl:versionInfo>0.4</owl:versionInfo>
</owl:Ontology>
<!-- ************************************
InfoItems
************************************ -->
<!-- TaxonBiology -->
<owl:Class rdf:ID="TaxonBiology">
<rdfs:label>Taxon Biology Info Item</rdfs:label>
<dc:title>Taxon Biology</dc:title>
<base:definition>An account of the biology of the taxon.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- TrophicStrategy -->
<owl:Class rdf:ID="TrophicStrategy">
<rdfs:label>Trophic Strategy Info Item</rdfs:label>
<dc:title>Trophic Strategy</dc:title>
<base:definition>Include nutritional aspects, diet, position in food network.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Cyclicity -->
<owl:Class rdf:ID="Cyclicity">
<rdfs:label>Cyclicity Info Item</rdfs:label>
<dc:title>Cyclicity</dc:title>
<base:definition>A state or condition characterised by regular repetition in time.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Dispersal -->
<owl:Class rdf:ID="Dispersal">
<rdfs:label>Dispersal Info Item</rdfs:label>
<dc:title>Dispersal</dc:title>
<base:definition>Dispersal strategies and mechanisms</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Migration -->
<owl:Class rdf:ID="Migration">
<rdfs:label>Migration Info Item</rdfs:label>
<dc:title>Migration</dc:title>
<base:definition>Periodic movement of organisms from one locality to another (e.g., for breeding)</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- LifeCycle -->
<owl:Class rdf:ID="LifeCycle">
<rdfs:label>LifeCycle Info Item</rdfs:label>
<dc:title>LifeCycle</dc:title>
<base:definition>Obligatory developmental transformations</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Reproduction -->
<owl:Class rdf:ID="Reproduction">
<rdfs:label>Reproduction Info Item</rdfs:label>
<dc:title>Reproduction</dc:title>
<base:definition>Reproduction cues, strategies, restraints</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Growth -->
<owl:Class rdf:ID="Growth">
<rdfs:label>Growth Info Item</rdfs:label>
<dc:title>Growth</dc:title>
<base:definition>Rate; parameters; allometries</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- LifeExpectancy -->
<owl:Class rdf:ID="LifeExpectancy">
<rdfs:label>LifeExpectancy Info Item</rdfs:label>
<dc:title>LifeExpectancy</dc:title>
<base:definition>The average period an organism can be expected to survive.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- MolecularBiology -->
<owl:Class rdf:ID="MolecularBiology">
<rdfs:label>MolecularBiology Info Item</rdfs:label>
<dc:title>MolecularBiology</dc:title>
<base:definition>Includes genomic, proteomic and biochemistry (e.g. Toxicity)</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Genetics -->
<owl:Class rdf:ID="Genetics">
<rdfs:label>Genetics Info Item</rdfs:label>
<dc:title>Genetics</dc:title>
<base:definition>Including karyotypes; </base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Physiology -->
<owl:Class rdf:ID="Physiology">
<rdfs:label>Physiology Info Item</rdfs:label>
<dc:title>Physiology</dc:title>
<base:definition>An account of the physiological processes.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Associations -->
<owl:Class rdf:ID="Associations">
<rdfs:label>Associations Info Item</rdfs:label>
<dc:title>Associations</dc:title>
<base:definition>Predator-prey; host-parasite, pollinators, symbiosis, mutualism, commensalism; hybridisation, ...</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Diseases -->
<owl:Class rdf:ID="Diseases">
<rdfs:label>Diseases Info Item</rdfs:label>
<dc:title>Diseases</dc:title>
<base:definition>Diseases of organisms</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Habitat -->
<owl:Class rdf:ID="Habitat">
<rdfs:label>Habitat Info Item</rdfs:label>
<dc:title>Habitat</dc:title>
<base:definition>Includes realm (e.g. Terrestrial etc) and climatic information (e.g. Boreal); also includes requirements and tolerances; horizontal and vertical distribution;</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Behaviour -->
<owl:Class rdf:ID="Behaviour">
<rdfs:label>Behaviour Info Item</rdfs:label>
<dc:title>Behaviour</dc:title>
<base:definition>Covers actions and reactions of organism in relation to its biotic and abiotic environment.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- PopulationBiology -->
<owl:Class rdf:ID="PopulationBiology">
<rdfs:label>PopulationBiology Info Item</rdfs:label>
<dc:title>PopulationBiology</dc:title>
<base:definition>Includes abundance information.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Evolution -->
<owl:Class rdf:ID="Evolution">
<rdfs:label>Evolution Info Item</rdfs:label>
<dc:title>Evolution</dc:title>
<base:definition>Phylogenetic information relating to the taxon</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- GeneralDescription -->
<owl:Class rdf:ID="GeneralDescription">
<rdfs:label>GeneralDescription Info Item</rdfs:label>
<dc:title>GeneralDescription</dc:title>
<base:definition>A comprehensive description of the characteristics of the taxon </base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- DiagnosticDescription -->
<owl:Class rdf:ID="DiagnosticDescription">
<rdfs:label>DiagnosticDescription Info Item</rdfs:label>
<dc:title>DiagnosticDescription</dc:title>
<base:definition>Distinguishing feature of this taxon from its closest relatives. FIXME: how do we know what it's relatives are? may be rendered in isolation.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- LookAlikes -->
<owl:Class rdf:ID="LookAlikes">
<rdfs:label>LookAlikes Info Item</rdfs:label>
<dc:title>LookAlikes</dc:title>
<base:definition>Other taxa that this taxon may be confused with. Common in invasive species communities.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Key -->
<owl:Class rdf:ID="Key">
<rdfs:label>Key Info Item</rdfs:label>
<dc:title>Key</dc:title>
<base:definition>FIXME: how do we reference an external resource? Diagnostic key for 'associated' species. </base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Morphology -->
<owl:Class rdf:ID="Morphology">
<rdfs:label>Morphology Info Item</rdfs:label>
<dc:title>Morphology</dc:title>
<base:definition>The appearance of the taxon (is it only external?); e.g. Habit; antomy (thee branch of morphology that deals with structure of animals)</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Cytology -->
<owl:Class rdf:ID="Cytology">
<rdfs:label>Cytology Info Item</rdfs:label>
<dc:title>Cytology</dc:title>
<base:definition>Cell biology: formation , structure and function of cells.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Size -->
<owl:Class rdf:ID="Size">
<rdfs:label>Size Info Item</rdfs:label>
<dc:title>Size</dc:title>
<base:definition>Average size, max, range; type of size (perimeter, length, volume, weight ...)</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Distribution -->
<owl:Class rdf:ID="Distribution">
<rdfs:label>Distribution Info Item</rdfs:label>
<dc:title>Distribution</dc:title>
<base:definition>Covers ranges, e.g., a global range, or a narrower one; may be biogeographical, political or other (e.g., managed areas like conservencies); endemism; native or exotic; ref :
Darwin Core Geospatial extension</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Management -->
<owl:Class rdf:ID="Management">
<rdfs:label>Management Info Item</rdfs:label>
<dc:title>Management</dc:title>
<base:definition>A statement about the level of need to manage a taxon which can be related to a piece of legislation, e.g., a CITES list.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- ConservationStatus -->
<owl:Class rdf:ID="ConservationStatus">
<rdfs:label>ConservationStatus Info Item</rdfs:label>
<dc:title>ConservationStatus</dc:title>
<base:definition>A description of the likelihood of the species becoming extinct in the present day or in the near future.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Legislation -->
<owl:Class rdf:ID="Legislation">
<rdfs:label>Legislation Info Item</rdfs:label>
<dc:title>Legislation</dc:title>
<base:definition>Legal regulations or statutes relating to the taxon.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Threats -->
<owl:Class rdf:ID="Threats">
<rdfs:label>Threats Info Item</rdfs:label>
<dc:title>Threats</dc:title>
<base:definition>The threats to which this taxon is subject.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Trends -->
<owl:Class rdf:ID="Trends">
<rdfs:label>Trends Info Item</rdfs:label>
<dc:title>Trends</dc:title>
<base:definition>An indication of whether a population is stable, or increasing or decreasing.</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Procedures -->
<owl:Class rdf:ID="Procedures">
<rdfs:label>Procedures Info Item</rdfs:label>
<dc:title>Procedures</dc:title>
<base:definition>Deals with how you go about managing this taxon; what are the known threats to this taxon? FIXME: how does this differ from management and threat?</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- RiskStatement -->
<owl:Class rdf:ID="RiskStatement">
<rdfs:label>RiskStatement Info Item</rdfs:label>
<dc:title>RiskStatement</dc:title>
<base:definition>Includes invasiveness, impacts</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- Uses -->
<owl:Class rdf:ID="Uses">
<rdfs:label>Uses Info Item</rdfs:label>
<dc:title>Uses</dc:title>
<base:definition>Relationships to humans; ref: Cook “Economic Botany”</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- ************************************
Basic InfoItems
************************************ -->
<!-- need rationalizing -->
<owl:Class rdf:ID="Ecology">
<rdfs:label>Ecology</rdfs:label>
<dc:title>Ecology</dc:title>
<base:definition>Ecology</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<owl:Class rdf:ID="Conservation">
<rdfs:label>Conservation</rdfs:label>
<dc:title>Conservation</dc:title>
<base:definition>Conservation</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<owl:Class rdf:ID="Use">
<rdfs:label>Use</rdfs:label>
<dc:title>Use</dc:title>
<base:definition>Use</base:definition>
<rdfs:subClassOf rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#InfoItem"/>
<rdfs:isDefinedBy rdf:resource="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel"/>
</owl:Class>
<!-- end need rationalizing -->
</rdf:RDF>
@
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