2015-03-06 19:51:08 +00:00
<?xml version="1.0" encoding="UTF-8"?>
2014-11-13 11:19:30 +00:00
<xs:schema version= "0.1" xmlns:xs= "http://www.w3.org/2001/XMLSchema"
targetNamespace="http://rs.nordgen.org/dwc/germplasm/0.1/terms/"
xmlns:dwc="http://rs.tdwg.org/dwc/terms/"
xmlns:gr="http://rs.nordgen.org/dwc/germplasm/0.1/terms/"
attributeFormDefault="qualified"
elementFormDefault="qualified"
>
<!--
*****************************************
WARNING! DRAFT SCHEMA! UNDER DEVELOPEMENT
This is the first draft version 0.1
*****************************************
-->
<!--
Darwin Core Extension for genetic resources, germplasm
Draft version January 2009, Dag Endresen (During the Darwin Core workshop in Copenhagen)
Modified draft version May 2009, Dag Endresen (Preparations for GIGA TAG in Rome, demo of new GBIF IPT)
Added version to the namespace (ahead of the SINGER GPG2 meeting at USDA in August 2009)
This draft version 0.1 is now locked, any modifications will be as a new version (0.2)
#
What would be the most reasonable namespace to use...?
Suggestion (for draft version): http://rs.nordgen.org/dwc/germplasm/0.1/terms/
Alternative (for draft version): http://atlas.nordgen.org/rs/dwc/germplasm/0.1/terms/
Alternative: http://rs.tdwg.org/dwc/germplasm/0.1/terms/
Alternative example: http://www.bioversityinternational.org/schemas/dwc/germplasm/0.1/terms/
#
Version numbering:
Suggestion to use the namespace with a 0.x version for the draft versions and proceed to 1.x when a stable version is reached
Suggestion: http://rs.tdwg.org/dwc/germplasm/0.1/terms/
#
Current GCP_Passport (1.05) use the ns: http://generationcp.org/schemas/gcp_passport/1.05
Previous GCP_Passport use the ns: http://www.ipgri.org/schemas/gcp_pass/1.03
MCPD namespace: http://www.ipgri.cgiar.org/schemas/mcpd/1.00 (NB! IPGRI is now Bioversity)
#
Relevant further information (Germplasm Passport Data):
http://gcpcr.grinfo.net/include/webservices/schema-documentation.php
See: http://www.generationcp.org/schemas/documentation/gcp_passport_1.05.xsd.html
See: http://chm.grinfo.net/index.php?app=data_schema& inc=schema_list
See: http://wwwdev.ngb.se/portal/index.php?app=data_schema& inc=schema_list
-->
<xs:import namespace= "http://rs.tdwg.org/dwc/terms/" schemaLocation= "http://darwincore.googlecode.com/svn/trunk/xsd/tdwg_dwcterms.xsd" />
<!-- ANY GENETIC RESOURCES IDENTIFIER -->
<xs:element name= "anyIdentifier" abstract= "true" substitutionGroup= "dwc:anyIdentifier" />
<!-- ANY GENETIC RESOURCES PROPERTY -->
<xs:element name= "anyProperty" abstract= "true" substitutionGroup= "dwc:anyProperty" />
<!-- ANY GENETIC RESOURCES CLASS TERM -->
<xs:element name= "anyClass" abstract= "true" substitutionGroup= "dwc:anyClass" />
<!-- I simply added germplasm sample ID and sample term here. Is there perhaps a better way...? May 2009, Dag Terje -->
<!-- ANY GENETIC RESOURCES SAMPLE IDENTIFIER -->
<xs:element name= "anyGermplasmID" abstract= "true" substitutionGroup= "dwc:anyIdentifier" />
<!-- ANY GENETIC RESOURCES SAMPLE TERM -->
<xs:element name= "anyGermplasmTerm" abstract= "true" substitutionGroup= "dwc:anyProperty" />
<!--
I am testing with gr:anyGermplasmTerm instead of dwc:anySampleTerm as first tested...
Would this work...? At least for a germplasm demo test version...? (Dag Endresen, 2009-05-13)
-->
<!--
***********************************************************
Additional terms for the darwin core germplasm sample class
***********************************************************
-->
<!--
NOTE: Enumeration NOT USED BELOW YET!
Note that the Enumeration defined below is not used as type definition for any of the relevant terms yet.
Conflicing with the default type for generic Darwin Core schema...?
How to solve this to be explored at a higher Darwin Core development/modelling level...
(Dag Endresen, January 2009, May 2009)
-->
<xs:simpleType name= "BiologicalStatusCodeEnum" >
<xs:restriction base= "xs:int" >
<xs:enumeration value= "100" > <xs:annotation > <xs:documentation > Wild</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "110" > <xs:annotation > <xs:documentation > Natural wild</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "120" > <xs:annotation > <xs:documentation > Semi-matural/wild</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "200" > <xs:annotation > <xs:documentation > Weedy</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "300" > <xs:annotation > <xs:documentation > Traditional cultivar/landrace</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "400" > <xs:annotation > <xs:documentation > Breeding/research material</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "410" > <xs:annotation > <xs:documentation > Breeders line</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "411" > <xs:annotation > <xs:documentation > Syntetic population</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "412" > <xs:annotation > <xs:documentation > Hybrid</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "413" > <xs:annotation > <xs:documentation > Founder stock/base population</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "414" > <xs:annotation > <xs:documentation > Inbred line (parent of hybrid cultivar)</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "415" > <xs:annotation > <xs:documentation > Segregating population</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "420" > <xs:annotation > <xs:documentation > Genetic stock</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "500" > <xs:annotation > <xs:documentation > Advanced/improved cultivar</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "999" > <xs:annotation > <xs:documentation > Other (elaborate in remarks)</xs:documentation> </xs:annotation> </xs:enumeration>
</xs:restriction>
</xs:simpleType>
<xs:simpleType name= "SampleAcquisitionEnum" >
<xs:restriction base= "xs:int" >
<xs:enumeration value= "10" > <xs:annotation > <xs:documentation > Wild habitat</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "11" > <xs:annotation > <xs:documentation > Forest/woodland</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "12" > <xs:annotation > <xs:documentation > Shrubland</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "13" > <xs:annotation > <xs:documentation > Grassland</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "14" > <xs:annotation > <xs:documentation > Desert/tundra</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "15" > <xs:annotation > <xs:documentation > Aquatic habitat</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "20" > <xs:annotation > <xs:documentation > Farm or cultivated habitat</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "21" > <xs:annotation > <xs:documentation > Field</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "22" > <xs:annotation > <xs:documentation > Orchard</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "23" > <xs:annotation > <xs:documentation > Backyard, kitchen or home garden</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "24" > <xs:annotation > <xs:documentation > Fallow land</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "25" > <xs:annotation > <xs:documentation > Pasture</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "26" > <xs:annotation > <xs:documentation > Farm store</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "27" > <xs:annotation > <xs:documentation > Threshing floor</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "28" > <xs:annotation > <xs:documentation > Park</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "30" > <xs:annotation > <xs:documentation > Market or shop</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "40" > <xs:annotation > <xs:documentation > Institute, experimental station, research organization, genebank</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "50" > <xs:annotation > <xs:documentation > Seed company</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "60" > <xs:annotation > <xs:documentation > Weedy, distributed or ruderal habitat</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "61" > <xs:annotation > <xs:documentation > Roadside</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "62" > <xs:annotation > <xs:documentation > Field margin</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "99" > <xs:annotation > <xs:documentation > Other (elaborate in remarks)</xs:documentation> </xs:annotation> </xs:enumeration>
</xs:restriction>
</xs:simpleType>
<xs:simpleType name= "TypeOfStorageEnum" >
<xs:restriction base= "xs:int" >
<xs:enumeration value= "10" > <xs:annotation > <xs:documentation > Seed collection</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "11" > <xs:annotation > <xs:documentation > Short term</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "12" > <xs:annotation > <xs:documentation > Medium term</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "13" > <xs:annotation > <xs:documentation > Long term</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "20" > <xs:annotation > <xs:documentation > Field collection</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "30" > <xs:annotation > <xs:documentation > In vitro collection (slow growth)</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "40" > <xs:annotation > <xs:documentation > Cryopreserved collection</xs:documentation> </xs:annotation> </xs:enumeration>
<xs:enumeration value= "99" > <xs:annotation > <xs:documentation > Other (elaborate in remarks)</xs:documentation> </xs:annotation> </xs:enumeration>
</xs:restriction>
</xs:simpleType>
<!-- Some terms from the earlier DRAFT DarwinCore seems to be modified (Dag Endresen, 2009 - 05 - 13) -->
<!-- dwc:anySamplingEventTerm to dwc:anyEventTerm -->
<!-- dwc:anySampleID to gr:anyGermplasmID (SampleID is perhaps now OccurrenceID?) -->
<!-- dwc:anySampleTerm to gr:anyGermplasmTerm -->
<!-- is GermplasmID the same as dwc:occurrenceID, perhaps GermplasmID is redundant by this dwc term...? -->
<xs:element name= "GermplasmID" substitutionGroup= "gr:anyGermplasmID" >
<xs:annotation >
<xs:documentation >
Germplasm Sample ID, there used to be a sampleID in a previous DRAFT Darwin Core...?
Does this mean that we should use occurrenceID also for samples...?
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "BiologicalStatusOfSample" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
(MCPD term: 20): Biological status of sample.
Wild, Crop wild relative (CWR), Primitive, Traditional cultivar/landrace,
Breeding line, Genetic stock, Modern cultivar
(recommended to follow a regulated vocabulary, or preferable the SAMPSTAT code, MCPD term 20).
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "BiologicalStatusOfSampleCode" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 20: Biological status of sample, SAMPSTAT.
SAMPSTAT codes distinguish wild and primitive cultivars
from modern cultivars and breeding lines (material under development).
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmIdentifier" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
MCPD term: 11: Accession name, ACCENAME.
Either a registered or other formal designation given to the accession.
For example: Rheinische Vorgebirgstrauben;Emma;Avlon
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "CollectingInstituteCode" substitutionGroup= "dwc:anyEventTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 4: Collecting institute code, COLLCODE.
FAO WIEWS institute code for the collecting/gathering institute.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "AncestralData" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 21: Ancestral data, ANCEST.
Information about either pedigree or other description of ancestral information.
For example a pedigree 'Hanna/7*Atlas//Turk/8*Atlas',
or a description 'mutation found in Hanna', 'selection from Irene'.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "PurdyPedigree" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
(MCPD term 21): Ancestral information following the purdy pedigree format.
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- Type of storage can be multiple instances, perhaps need to be separate class? -->
<xs:element name= "TypeOfStorage" substitutionGroup= "gr:anyGermplasmTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 27: Type of germplasm storage, STORAGE.
Refer to FAO/IPGRI Genebank Standards 1994 for details on storage type.
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- Safety duplication of germplasm as a security copy -->
<!-- Location of Safety Duplicates as class, multiple instances -->
<xs:element name= "LocationOfSafetyDuplication" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<!-- <xs:element ref="dwc:SampleID" minOccurs="1"/> -->
<xs:element ref= "gr:GermplasmID" minOccurs= "1" />
<xs:element ref= "gr:anySafetyDuplicationTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- <xs:element name="SampleID" substitutionGroup="dwc:anyIdentifier"/> -->
<xs:element name= "anySafetyDuplicationTerm" abstract= "true" substitutionGroup= "dwc:anyProperty" />
<xs:element name= "SafetyDuplicationID" substitutionGroup= "dwc:anyIdentifier" />
<xs:element name= "SafetyDuplicationInstituteCode" substitutionGroup= "gr:anySafetyDuplicationTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 26: Location of safety duplicates, DUPLSITE.
FAO institute code of the institute where a safety duplicate
of the accession is maintained.
Example: For Svalbard Global Seed Vault (SGSV), use the FAO WIEWS institute code NOR051.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "SafetyDuplicationInstitute" substitutionGroup= "gr:anySafetyDuplicationTerm" />
<xs:element name= "SafetyDuplicationDate" substitutionGroup= "gr:anySafetyDuplicationTerm" />
<!-- Treaties and regulations (for PGRFA, Germplasm) -->
<!--
List treaty/regulation name, and issuing body,
and perhaps when sample was included under the regulations
NB! This class desperatly need to be developed further...!
Example: ITPGRFA, International Treaty for Plant Genetic Resources
The ITPGRFA Annex 1 list the crops regulated by this treaty.
-->
<xs:element name= "GermplasmTreatiesAndRegulations" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<!-- <xs:element ref="dwc:SampleID" minOccurs="1"/> -->
<xs:element ref= "gr:GermplasmID" minOccurs= "1" />
<xs:element ref= "gr:anyGermplasmRegulationTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- <xs:element name="SampleID" substitutionGroup="dwc:anyIdentifier"/> -->
<xs:element name= "anyGermplasmRegulationTerm" abstract= "true" substitutionGroup= "dwc:anyProperty" />
<xs:element name= "GermplasmRegulationID" substitutionGroup= "dwc:anyIdentifier" />
<xs:element name= "TreatyOrRegulationName" substitutionGroup= "gr:anyGermplasmRegulationTerm" />
<xs:element name= "TreatyOrRegulationGoverningBody" substitutionGroup= "gr:anyGermplasmRegulationTerm" />
<!-- SAMPLE ACQUISITION (DONOR EVENT) -->
<!--
Will the donor/acquisition class also need the reference to the genebank institute
receiving the sample to keep track of a chain of donor events
proceeding the donation of the sample to the holding genebank...?
-->
<xs:element name= "SampleAcquisition" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<xs:element ref= "gr:GermplasmID" minOccurs= "1" />
<!--
<xs:element ref= "dwc:SampleID" minOccurs= "1" />
<xs:any namespace= "##other" maxOccurs= "unbounded" minOccurs= "0" />
-->
<xs:element ref= "gr:anySampleAcquisitionTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name= "anySampleAcquisitionTerm" abstract= "true" substitutionGroup= "dwc:anyProperty" />
<xs:element name= "SampleAcquisitionID" substitutionGroup= "dwc:anyIdentifier" />
<xs:element name= "DonorsSampleIdentifier" substitutionGroup= "dwc:anyIdentificationTerm" />
<xs:element name= "SampleAcquisitionSource" substitutionGroup= "gr:anySampleAcquisitionTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 22: Collecting/acquisition source, COLLSRC.
Coded as integer value, defined enumeration.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "SampleAcquisitionDate" substitutionGroup= "gr:anySampleAcquisitionTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 12: Acquisition date, ACQDATE.
Date when the germplasm sample (accession) entered the genebank collection.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "DonorInstituteCode" substitutionGroup= "gr:anySampleAcquisitionTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 23: Donor institute code, DONORCODE
FAO WIEWS institute code for the donor institute.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "DonorInstitute" substitutionGroup= "gr:anySampleAcquisitionTerm" >
<xs:annotation >
<xs:documentation >
(MCPD term 23): Donor institute name.
If the FAO WIEWS institute code is available, this term should not be reported.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "SampleAcquisitionRemarks" substitutionGroup= "gr:anySampleAcquisitionTerm" />
<!-- BREEDING EVENT (Cultivation event, "similar" but different from Sampling Event) -->
<!-- These breeder terms may not need a separate class, only one instance per sample -->
<xs:element name= "BreedingEventGroup" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<xs:element ref= "gr:GermplasmID" minOccurs= "1" />
<!--
<xs:element ref= "dwc:SampleID" minOccurs= "1" />
<xs:element ref= "gr:BreedingEventID" minOccurs= "1" />
<xs:any namespace= "##other" maxOccurs= "unbounded" minOccurs= "0" />
-->
<xs:element ref= "gr:anyBreedingEventTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name= "anyBreedingEventTerm" abstract= "true" substitutionGroup= "gr:anyProperty" />
<xs:element name= "BreedingEventID" substitutionGroup= "gr:anyIdentifier" />
<xs:element name= "BreedersSampleIdentifier" substitutionGroup= "gr:anyBreedingEventTerm" />
<xs:element name= "BreedingYear" substitutionGroup= "gr:anyBreedingEventTerm" />
<xs:element name= "BreederPerson" substitutionGroup= "gr:anyBreedingEventTerm" />
<xs:element name= "BreederInstituteCode" substitutionGroup= "gr:anyBreedingEventTerm" >
<xs:annotation >
<xs:documentation >
MCPD term 19: Breeding institute code, BREDCODE
FAO WIEWS institute code for the breeding institute.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "BreederInstitute" substitutionGroup= "gr:anyBreedingEventTerm" >
<xs:annotation >
<xs:documentation >
(MCPD term 19): Breeder institute name.
If the FAO WIEWS institute code is available, this term should not be reported.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "BreedingCountry" substitutionGroup= "gr:anyBreedingEventTerm" />
<xs:element name= "BreedingCountryCode" substitutionGroup= "gr:anyBreedingEventTerm" />
<xs:element name= "BreedingEventRemarks" substitutionGroup= "gr:anyBreedingEventTerm" />
<!--
INFO: mapping of other MCPD terms to DwC terms2
dwc:CatalogNumber MCPD term: 2: Accession number, ACCENUMB (unique identifier for samples within a genebank collection)
-->
<!-- ************************************** -->
<!-- Germplasm trait measurement data (C&E) -->
<!-- ************************************** -->
<!--
Germplasm Trait Measurements (extends DarwinCore MeasurementOrFact)
DRAFT data exchange format for germplasm trait measurements (C& E).
DRAFT descriptors developed for the European ECPGR community as part of EPGRIS3 (workshop 2009-05-07 in Bonn).
See: http://www.epgris3.eu/
See: http://www.epgris3.eu/EPGRIS3%2020090507workshop.htm
See: http://www.ecpgr.cgiar.org/
DATASET
UPLOADERCODE
DATASET_REMARK
EXPERIMENT
EXPERIMENT_NUMBER
EXPERIMENT_DESCRIPTION
EXPERIMENT_YEAR
EXPERIMENT_YEAR
EXPERIMENT_LONGITUDE
EXPERIMENT_LATITUDE
EXPERIMENT_REPORT
TRAIT
TRAIT_NUMBER
TRAIT_NAME
TRAIT_REMARK
TRAIT_METHOD
GENOTYPE
GENOTYPE_NUMBER
GENOTYPE_NICODE
GENOTYPE_INSTCODE
GENOTYPE_ACCENUMB
GENOTYPE_GENUS
SCORE
GENOTYPE_NUMBER
EXPERIMENT_NUMBER
TRAIT_NUMBER
SCORE
MAPPING of EPGRIS3 TRAIT terms to the standards DwC core terms
dwc:measurementID SCORE_ID
dwc:measurementType perhaps use this instead of defining GermplasmTraitClass below...?
dwc:measurementValue SCORE
dwc:measurementAccuracy SCORE_ACCURACY (not in the draft Germplasm Trait format, EPGRIS3 C& E)
dwc:measurementUnit SCORE_UNIT
dwc:measurementDeterminedDate SCORE_DATE
dwc:measurementDeterminedBy SCORE_PERSON
dwc:measurementMethod GermplasmExperimentClass defined below for more details (atomized acording to EPGRIS3 C& E)
dwc:measurementRemarks SCORE_REMARKS (not in the draft Germplasm Trait format, EPGRIS3 C& E)
-->
<xs:element name= "MeasurementByInstituteCode" substitutionGroup= "dwc:anyMeasurementTerm" >
<xs:annotation >
<xs:documentation >
Germplasm trait observation determined by institute code, INSTCODE.
FAO WIEWS institute code for the institute performing the observation/measurement.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "MeasurementGrowthStage" substitutionGroup= "dwc:anyMeasurementTerm" >
<xs:annotation >
<xs:documentation >
Germplasm term to describe the growth stage of the plant when the trait observation or measurement was made.
Examples include: Ripening, heading, ...
A modifier of the TDWG SDD style could be applied here to be more generic and include modifiers like
for example part of the plant where the observation was made (eg. leaf, stem, seeds).
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- **************** -->
<!-- TRAIT DESCRIPTOR -->
<!-- **************** -->
<!-- Germplasm Trait is the definition of the observation descriptor (extends measurementMethod) -->
<xs:element name= "GermplasmTraitID" substitutionGroup= "gr:anyGermplasmID" >
<xs:annotation >
<xs:documentation >
Trait ID, Germplasm Trait Descriptor (Measurement Descriptor).
May eventually develop into a controlled and currated ontology for trait descriptors.
Each trait descriptor could eventually be identified by a GUID, for example LSID.
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- Multiple Germplasm Trait Descriptors -->
<xs:element name= "GermplasmTraitGroup" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<xs:element ref= "gr:GermplasmTraitID" minOccurs= "1" />
<xs:element ref= "gr:anyGermplasmTraitTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name= "anyGermplasmTraitTerm" abstract= "true" substitutionGroup= "gr:anyProperty" />
<xs:element name= "GermplasmTraitIdentifier" substitutionGroup= "gr:anyGermplasmTraitTerm" > <!-- TRAIT_NAME -->
<xs:annotation >
<xs:documentation >
EPGRIS3: TRAIT_NAME
English name of the trait
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmTraitClass" substitutionGroup= "gr:anyGermplasmTraitTerm" >
<xs:annotation >
<xs:documentation >
Classification of the trait descriptor (a standard controlled vocabulary could be developed).
Examples include: Agrobotanical, morphological, chemical, phenological, molecular biology,
disease susceptibility/resistance, tolerance (abiotic), utilization.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmTraitScale" substitutionGroup= "gr:anyGermplasmTraitTerm" >
<xs:annotation >
<xs:documentation >
Scale used for the observations/measurements.
Absolute, interval, nominal, ordinal, ratio, or relative values.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmTraitSource" substitutionGroup= "gr:anyGermplasmTraitTerm" >
<xs:annotation >
<xs:documentation >
Reference to the source standard Germplasm Descriptor.
For example the UPOV descriptor or the Bioversity Crop Descriptor identifier.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmTraitRemarks" substitutionGroup= "gr:anyGermplasmTraitTerm" />
<!-- **************** -->
<!-- TRAIT EXPERIMENT -->
<!-- **************** -->
<!-- Germplasm Experiment is the description of the trait observation event/project/experiment -->
<xs:element name= "GermplasmExperimentID" substitutionGroup= "gr:anyGermplasmID" >
<xs:annotation >
<xs:documentation >
Experiment ID, Germplasm Trait Descriptor (Measurement Event).
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- Multiple Germplasm Trait Experiments -->
<xs:element name= "GermplasmExperimentGroup" substitutionGroup= "dwc:anyClass" >
<xs:complexType >
<xs:sequence >
<xs:element ref= "gr:GermplasmExperimentID" minOccurs= "1" />
<xs:element ref= "gr:anyGermplasmExperimentTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name= "anyGermplasmExperimentTerm" abstract= "true" substitutionGroup= "gr:anyProperty" />
<xs:element name= "GermplasmExperimentIdentifier" substitutionGroup= "gr:anyGermplasmExperimentTerm" > <!-- EXPERIMENT_NUMBER -->
<xs:annotation >
<xs:documentation >
EPGRIS3: EXPERIMENT_NUMBER
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmExperimentRemarks" substitutionGroup= "gr:anyGermplasmExperimentTerm" > <!-- EXPERIMENT_DESCRIPTION -->
<xs:annotation >
<xs:documentation >
EPGRIS3: EXPERIMENT_DESCRIPTION
Information relevant for the interpretation of the scores in the experiment
such as experimental design, location, experimentor, weather, etc.
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmExperimentYear" substitutionGroup= "gr:anyGermplasmExperimentTerm" > <!-- EXPERIMENT_YEAR -->
<xs:annotation >
<xs:documentation >
EPGRIS3: EXPERIMENT_YEAR
</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name= "GermplasmExperimentReport" substitutionGroup= "gr:anyGermplasmExperimentTerm" > <!-- EXPERIMENT_REPORT -->
<xs:annotation >
<xs:documentation >
EPGRIS3: EXPERIMENT_REPORT
A reference to the report of the experiment, either supplied as the file name or the URL of the report.
</xs:documentation>
</xs:annotation>
</xs:element>
<!-- *************** -->
<!-- Cultivar domain -->
<!-- *************** -->
<!-- FAO have developed a cultivar database -->
<!-- NB! Probably much better to take this out in separate extension...! -->
<!-- FAO to develop this extension...? -->
<!--
<xs:group name= "CultivarGroup" >
<xs:sequence >
<xs:choice maxOccurs= "unbounded" >
<xs:element ref= "dwc:anyIdentifier" />
<xs:element ref= "dwc:anyClass" />
<xs:element ref= "gr:anyCultivarTerm" minOccurs= "0" maxOccurs= "unbounded" />
</xs:choice>
</xs:sequence>
</xs:group>
<xs:element name= "anyCultivarTerm" abstract= "true" substitutionGroup= "cultivar:anyProperty" />
<xs:element name= "CultivarID" substitutionGroup= "cultivar:anyIdentifier" />
<xs:element name= "CultivarName" substitutionGroup= "cultivar:anyIdentificationTerm" />
-->
</xs:schema>
