diff --git a/README.md b/README.md index ef7a29e..1636b58 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ Darwin Core is a standard maintained by the [Darwin Core Maintenance Interest Gr Documents: -- [List of terms document](https://dwc.tdwg.org/list/): Comprehensive metadata for current and obsolete terms in human readable form +- [List of terms document](https://dwc.tdwg.org/list/): Comprehensive metadata for current and obsolete terms in human readable form - [Complete term history table](vocabulary/term_versions.csv): A CSV file with the full version history of Darwin Core terms - [Distribution documents](dist/): Simple CSV files to start using Darwin Core - [Website documents](docs/): Markdown files that form the source for the [Darwin Core website](https://dwc.tdwg.org/) @@ -25,19 +25,20 @@ The repository structure is described below. Files/directories indicated with `G ``` ├── .github │ ├── ISSUE_TEMPLATE : Directory of issue templates generated by GitHub -│ ├── CONTRIBUTING.md : Guide on how to contribute, create issues, etc. +│ └── CONTRIBUTING.md : Guide on how to contribute, create issues, etc. │ ├── build -│ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary -│ ├── dwc_terms_guides_rdf : Directory containing editable template for generating RDF guide -│ ├── dwc_terms_guides_text : Directory containing editable template for generating text guide -│ ├── dwc_terms_guides_xml : Directory containing editable template for generating XML guide -│ ├── dwc_terms_namespace : Directory containing editable template for generating namespace policy -│ ├── dwc_terms_simple : Directory containing editable template for generating Simple DwC guide -│ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary -│ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary -│ ├── xml : Directory for build script and configs for XML extension definitions -│ ├── ext : Directory of GENERATED XML extension definitions +│ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary +│ ├── dwc_terms_guides_rdf : Directory containing editable template for generating RDF guide +│ ├── dwc_terms_guides_text : Directory containing editable template for generating text guide +│ ├── dwc_terms_guides_xml : Directory containing editable template for generating XML guide +│ ├── dwc_terms_namespace : Directory containing editable template for generating namespace policy +│ ├── dwc_terms_simple : Directory containing editable template for generating Simple DwC guide +│ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary +│ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary +│ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary +│ ├── xml : Directory of build script and configs for XML extension definitions +│ ├── ext : Directory for GENERATED XML extension definitions │ ├── README.md : Workflow for generating a new version of the vocabulary │ ├── build_other_doc_header.py : Script to build non-list of terms documents from their editable templates │ ├── build-termlist.ipynb : Obsolete Juyter notebook to construct the term list (morphed to .py version) @@ -51,10 +52,11 @@ The repository structure is described below. Files/directories indicated with `G │ ├── terms.tmpl : A Jinja2 template to format the Quick Reference Guide │ ├── update_previous_doc.py : Script to move current doc to a version and update version links in it │ └── workflow_diagram.png : Figure used in README.md to show how to create a new version of the standard +│ ├── dist : GENERATED Distribution files generated by build.py -│   ├── all_dwc_vertical.csv : GENERATED CSV file with all Darwin Core terms as a column -│   ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row -│   └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column +│ ├── all_dwc_vertical.csv : GENERATED CSV file with all Darwin Core terms as a column +│ ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row +│ └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column │ ├── docs (GENERATED except for index.md) │ ├── doe : Degree of Establishment Controlled Vocabulary List of Terms @@ -73,7 +75,7 @@ The repository structure is described below. Files/directories indicated with `G │ └── index.md : Website home page (manually maintained) │ ├── vocabulary -│ └── term_versions.csv : Darwin Core term versions, contains the complete history of the terms +│ └── term_versions.csv : GENERATED Darwin Core term versions, contains the complete history of the terms │ ├── .gitignore : Files and directories to be ignored by git ├── LICENSE : Repository license diff --git a/build/xml/occurrence_core_list.csv b/build/xml/occurrence_core_list.csv index ab1a7fa..6b7aa65 100644 --- a/build/xml/occurrence_core_list.csv +++ b/build/xml/occurrence_core_list.csv @@ -31,6 +31,7 @@ Occurrence,http://rs.tdwg.org/dwc/terms/lifeStage,,,,,, Occurrence,http://rs.tdwg.org/dwc/terms/reproductiveCondition,,,,,, Occurrence,http://rs.tdwg.org/dwc/terms/caste,,,,,, Occurrence,http://rs.tdwg.org/dwc/terms/behavior,,,,,, +Occurrence,http://rs.tdwg.org/dwc/terms/vitality,,,,,, Occurrence,http://rs.tdwg.org/dwc/terms/establishmentMeans,,http://rs.gbif.org/vocabulary/dwc/establishment_means_2022-02-02.xml,,,, Occurrence,http://rs.tdwg.org/dwc/terms/degreeOfEstablishment,,http://rs.gbif.org/vocabulary/dwc/degree_of_establishment_2022-02-02.xml,,,, Occurrence,http://rs.tdwg.org/dwc/terms/pathway,,http://rs.gbif.org/vocabulary/dwc/pathway_2022-02-02.xml,,,, @@ -185,4 +186,4 @@ Taxon,http://rs.tdwg.org/dwc/terms/vernacularName,,,,,, Taxon,http://rs.tdwg.org/dwc/terms/nomenclaturalCode,,http://rs.gbif.org/vocabulary/gbif/nomenclatural_code.xml,,,, Taxon,http://rs.tdwg.org/dwc/terms/taxonomicStatus,,,,,, Taxon,http://rs.tdwg.org/dwc/terms/nomenclaturalStatus,,http://rs.gbif.org/vocabulary/gbif/nomenclatural_status_2019-02-08.xml,,,, -Taxon,http://rs.tdwg.org/dwc/terms/taxonRemarks,,,,,, \ No newline at end of file +Taxon,http://rs.tdwg.org/dwc/terms/taxonRemarks,,,,,,