From 4979106a1230e1d414a828e6c76312f53da209fb Mon Sep 17 00:00:00 2001 From: tucotuco Date: Tue, 13 Jan 2015 19:12:07 +0100 Subject: [PATCH] Adding more examples. --- examples/examples_material_sample.md | 15 ++ examples/examples_observation.md | 43 +++++ examples/examples_specimen.md | 98 +++++++++++ ...reserved_specimen.md => examples_taxon.md} | 153 +----------------- examples/index.html | 8 +- 5 files changed, 162 insertions(+), 155 deletions(-) create mode 100644 examples/examples_material_sample.md create mode 100644 examples/examples_observation.md create mode 100644 examples/examples_specimen.md rename examples/{example_preserved_specimen.md => examples_taxon.md} (71%) diff --git a/examples/examples_material_sample.md b/examples/examples_material_sample.md new file mode 100644 index 0000000..ab7ff8d --- /dev/null +++ b/examples/examples_material_sample.md @@ -0,0 +1,15 @@ +## Examples - Material Samples + +This page shows examples of how to populate Darwin Core terms for Material Sample records. + +##### Material Sample + +Model: Organism sampled (e.g., biopsy) in the wild. + +Model: Material sample from an organism in the wild and sample put into a collection (blood sample, biopsy). + +Model: Material sample from an organism in captivity and sample put into a collection (blood sample, biopsy) + +Model: Repeated instances of material sample for the same organism over time. + +Model: Repeated instances of material sample from the same captive organism over time. diff --git a/examples/examples_observation.md b/examples/examples_observation.md new file mode 100644 index 0000000..c57cbb4 --- /dev/null +++ b/examples/examples_observation.md @@ -0,0 +1,43 @@ +## Examples - Observations + +This page shows examples of how to populate Darwin Core terms for Observation records. + +##### Human Observation + +Model: Organism observed in the wild and written in field notes. + +Model: Pair of living organisms observed in the wild and documented in field notes. + +``` +Record = HumanObservation +type = Event +occurrenceID = urn:catalog:AUDCLO:EBIRD:OBS64515288 +modified = 2009-02-17T07:33:04Z +institutionCode = AUDCLO +collectionCode = EBIRD +individualCount = 2 +eventID = http://guid.mvz.org/events/2006/11/26/17 +samplingProtocol = area count +eventDate = 2006-11-26 +locationID = http://guid.mvz.org/sites/arg/127 +country = Argentina +countryCode = AR +stateProvince = Neuquén +locality = Valle Limay, Estancia Rincon Grande, 48 ha area with centroid at this point +decimalLatitude = -40.97467 +decimalLongitude = -71.0734 +geodeticDatum = WGS84 +coordinateUncertaintyInMeters = 200 +scientificName = Anthus hellmayri +class = Aves +genus = Anthus +specificEpithet = hellmayri +``` + +Model: Organism photographed in the wild. + +Model: Organism measured in a study and published in journal article. + +Model: Taxon said to occur in a protected area in 2009. + +##### Machine Observation diff --git a/examples/examples_specimen.md b/examples/examples_specimen.md new file mode 100644 index 0000000..2fe7dfa --- /dev/null +++ b/examples/examples_specimen.md @@ -0,0 +1,98 @@ +## Examples - Specimens + +This page shows examples of how to populate Darwin Core terms for Specimen records. + +##### Preserved Specimen + +Model: Single whole native organism collected in the wild and put into a collection. + +``` +type=PhysicalObject +modified = 2009-02-12T12:43:31 +language = en +license = http://creativecommons.org/publicdomain/zero/1.0/legalcode +rightsHolder = Regents of the University of California +accessRights = http://vertnet.org/resources/norms.html +references = http://arctos.database.museum/guid/MVZ:Mamm:14523 +institutionID = http://biocol.org/urn:lsid:biocol.org:col:34777 +collectionID = http://grbio.org/cool/0rht-pj95 +institutionCode = MVZ +collectionCode = Mammals +basisOfRecord = PreservedSpecimen +occurrenceID = urn:occurrence:Arctos:MVZ:Mamm:14523:770093 +catalogNumber = 14523 +recordNumber = 8962 +recordedBy = Harry S. Swarth, W. L. Chandler +individualCount = 1 +sex = male +establishmentMeans = native +occurrenceStatus = present +preparations = skull | study skin +disposition = in collection +organismID = http://arctos.database.museum/guid/MVZ:Mamm:14523 +eventDate = 1911-05-14 +startDayOfYear = 134 +endDayOfYear = 134 +year = 1911 +month = 5 +day = 14 +verbatimEventDate = 14 May 1911 +higherGeography = North America | United States | California | Kern County +country = United States +countryCode = US +stateProvince = California +county = Kern +Locality = 8 mi NE Bakersfield +verbatimlocality = Bakersfield, 8 mi NE; North America, United States, California, Kern County +decimalLatitude = 35.45038 +decimalLongitude = -118.9092 +geodeticDatum = North American Datum 1927 +coordinateUncertaintyInMeters = 13696 +coordinatePrecision = 0.00001 +verbatimCoordinates = 35.45038/-118.9092 +verbatimCoordinateSystem = decimal degrees +georeferencedBy = Kristina Yamamoto +georeferencedDate = 2005-12-21 +georeferenceProtocol = VertNet Georeferencing Guidelines +georeferenceSources = Terrain Navigator Pro version 7.0 USGS 1:24,000 +georeferenceVerificationStatus = unverified +scientificName = Perognathus inornatus inornatus +higherClassification = Animalia | Chordata | Mammalia | Rodentia | Heteromyidae | Heteromyidae +kingdom = Animalia +phylum = Chordata +class = Mammalia +order = Rodentia +family = Heteromyidae +genus = Heteromyidae +specificEpithet = inornatus +infraspecificEpithet = inornatus +taxonRank = subspecies +nomenclaturalCode = ICZN + +``` + +Model: Whole organism recorded (any combination of sound, image, video, field notes) in the wild and entered in a collection database. + +Model: Whole organism captured, recorded (sound, image, video) along with measurements, released in the wild and entered in a collection database. + +Model: Whole organism collected from captivity and put into a collection. + +Model: Whole organism collected from the wild, but escaped from captivity, and put into a collection. + +Model: Parasite of organism, parasite cataloged with specimen of organism. + +Model: Parasite of organism, parasite cataloged separate from specimen (in the same or in a different collection). + +Model: Record of organism, where specimen is now in another collection. + +Model: Repeated instances of material sample for the same organism over time, then organism put into a collection. + +Model: Repeated instances of material sample for the same captive organism over time, then organism put into a collection. + +Model: Repeated instances of the same organism (with media, literature) captured over time. + +Model: Multiple organisms collected in the wild together, put into a collection and cataloged as a lot. + +##### Fossil specimen + +##### Living specimen diff --git a/examples/example_preserved_specimen.md b/examples/examples_taxon.md similarity index 71% rename from examples/example_preserved_specimen.md rename to examples/examples_taxon.md index 5edfe25..339654f 100644 --- a/examples/example_preserved_specimen.md +++ b/examples/examples_taxon.md @@ -1,155 +1,6 @@ -## Examples - Preserved Specimens +## Examples - Taxa -This page shows examples of how to populate Darwin Core terms for kinds of records for preserved specimens. - -##### Preserved Specimen - -Model: Single whole native organism collected in the wild and put into a collection. - -``` -type=PhysicalObject -modified = 2009-02-12T12:43:31 -language = en -license = http://creativecommons.org/publicdomain/zero/1.0/legalcode -rightsHolder = Regents of the University of California -accessRights = http://vertnet.org/resources/norms.html -references = http://arctos.database.museum/guid/MVZ:Mamm:14523 -institutionID = http://biocol.org/urn:lsid:biocol.org:col:34777 -collectionID = http://grbio.org/cool/0rht-pj95 -institutionCode = MVZ -collectionCode = Mammals -basisOfRecord = PreservedSpecimen -occurrenceID = urn:occurrence:Arctos:MVZ:Mamm:14523:770093 -catalogNumber = 14523 -recordNumber = 8962 -recordedBy = Harry S. Swarth, W. L. Chandler -individualCount = 1 -sex = male -establishmentMeans = native -occurrenceStatus = present -preparations = skull | study skin -disposition = in collection -organismID = http://arctos.database.museum/guid/MVZ:Mamm:14523 -eventDate = 1911-05-14 -startDayOfYear = 134 -endDayOfYear = 134 -year = 1911 -month = 5 -day = 14 -verbatimEventDate = 14 May 1911 -higherGeography = North America | United States | California | Kern County -country = United States -countryCode = US -stateProvince = California -county = Kern -Locality = 8 mi NE Bakersfield -verbatimlocality = Bakersfield, 8 mi NE; North America, United States, California, Kern County -decimalLatitude = 35.45038 -decimalLongitude = -118.9092 -geodeticDatum = North American Datum 1927 -coordinateUncertaintyInMeters = 13696 -coordinatePrecision = 0.00001 -verbatimCoordinates = 35.45038/-118.9092 -verbatimCoordinateSystem = decimal degrees -georeferencedBy = Kristina Yamamoto -georeferencedDate = 2005-12-21 -georeferenceProtocol = VertNet Georeferencing Guidelines -georeferenceSources = Terrain Navigator Pro version 7.0 USGS 1:24,000 -georeferenceVerificationStatus = unverified -scientificName = Perognathus inornatus inornatus -higherClassification = Animalia | Chordata | Mammalia | Rodentia | Heteromyidae | Heteromyidae -kingdom = Animalia -phylum = Chordata -class = Mammalia -order = Rodentia -family = Heteromyidae -genus = Heteromyidae -specificEpithet = inornatus -infraspecificEpithet = inornatus -taxonRank = subspecies -nomenclaturalCode = ICZN - -``` - -Model: Whole organism recorded (any combination of sound, image, video, field notes) in the wild and entered in a collection database. - -Model: Whole organism captured, recorded (sound, image, video) along with measurements, released in the wild and entered in a collection database. - -Model: Whole organism collected from captivity and put into a collection. - -Model: Whole organism collected from the wild, but escaped from captivity, and put into a collection. - -Model: Parasite of organism, parasite cataloged with specimen of organism. - -Model: Parasite of organism, parasite cataloged separate from specimen (in the same or in a different collection). - -Model: Record of organism, where specimen is now in another collection. - -Model: Repeated instances of material sample for the same organism over time, then organism put into a collection. - -Model: Repeated instances of material sample for the same captive organism over time, then organism put into a collection. - -Model: Repeated instances of the same organism (with media, literature) captured over time. - -Model: Multiple organisms collected in the wild together, put into a collection and cataloged as a lot. - -##### Fossil specimen - -##### Living specimen - -##### Material sample - -Model: Organism sampled (e.g., biopsy) in the wild. - -Model: Material sample from an organism in the wild and sample put into a collection (blood sample, biopsy). - -Model: Material sample from an organism in captivity and sample put into a collection (blood sample, biopsy) - -Model: Repeated instances of material sample for the same organism over time. - -Model: Repeated instances of material sample from the same captive organism over time. - -#### Observation - -##### Human Observation - -Model: Organism observed in the wild and written in field notes. - -Model: Pair of living organisms observed in the wild and documented in field notes. - -``` -dwc:basisOfRecord>HumanObservation -dcterms:type=Event -dwc:occurrenceID=urn:catalog:AUDCLO:EBIRD:OBS64515288 -dcterms:modified=2009-02-17T07:33:04Z -dwc:institutionCode=AUDCLO -dwc:collectionCode>EBIRD -dwc:individualCount>2 -dwc:eventID>http://guid.mvz.org/events/2006/11/26/17 -dwc:samplingProtocol>area count -dwc:eventDate>2006-11-26 -dwc:locationID>http://guid.mvz.org/sites/arg/127 -dwc:country>Argentina -dwc:countryCode>AR -dwc:stateProvince>Neuquén -dwc:locality>Valle Limay, Estancia Rincon Grande, 48 ha area with centroid at this point -dwc:decimalLatitude>-40.97467 -dwc:decimalLongitude>-71.0734 -dwc:geodeticDatum>WGS84 -dwc:coordinateUncertaintyInMeters>200 -dwc:scientificName>Anthus hellmayri -dwc:class>Aves -dwc:genus>Anthus -dwc:specificEpithet>hellmayri -``` - -Model: Organism photographed in the wild. - -Model: Organism measured in a study and published in journal article. - -Model: Taxon said to occur in a protected area in 2009. - -##### Machine Observation +This page shows examples of how to populate Darwin Core terms for Taxon records. ### Species Checklists diff --git a/examples/index.html b/examples/index.html index d8c2ec5..55f3d0e 100644 --- a/examples/index.html +++ b/examples/index.html @@ -73,22 +73,22 @@

Specimens

Observations

Material samples

Taxon