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# Darwin Core
Darwin Core is a standard maintained by the Darwin Core maintenance group. It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to **facilitate the sharing of information about biological diversity** by providing identifiers, labels, and definitions. Darwin Core is primarily based on taxa, their occurrence in nature as documented by observations, specimens, samples, and related information.
Darwin Core is a standard maintained by the [Darwin Core Maintenance Interest Group](https://www.tdwg.org/standards/dwc/#maintenance%20group). It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to **facilitate the sharing of information about biological diversity** by providing identifiers, labels, and definitions. Darwin Core is primarily based on taxa, their occurrence in nature as documented by observations, specimens, samples, and related information.
## Getting started
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The repository structure is described below. Files/directories indicated with `GENERATED` should not be edited manually.
```
├── README.md : Description of this repository
├── LICENSE : Repository license
├── standard : All content considered part of the Darwin Core standard
│ ├── vocabularies
│ │ └── term_versions.csv : Darwin Core term versions history
│ │
│ └── documents
  ├── simple : Simple Darwin Core guide
│  ├── rdf : RDF guide
│  ├── text : Text guide
  └── xml : XML guide
├── www : GENERATED Darwin Core website
│ └── guides
  └── index.html : GENERATED Darwin Core quick reference guide
├── .github
│ ├── ISSUE_TEMPLATE : Directory of issue templates generated by GitHub
│ ├── CONTRIBUTING.md : Guide on how to contribute, create issues, etc.
├── build
│ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary
│ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary
│ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary
│ ├── README.md : Workflow for generating a new version of the vocabulary
│ ├── build-termlist.ipynb : Juyter notebook to construct the term list
│ ├── build-temlist.py : Script to build Markdown pages that provide term metadata for complex vocabularies
│ ├── build.py : Build script to generate distribution files from the normative document
│ ├── generate_term_versions.py : Script to build the terms_versions.csv file
│ ├── qrg-list.csv : List of the term IRIs in the order that they are to appear in the Quick Reference Guide
│ ├── requirements.txt : List of libraries required by the build scripts
│ ├── termlist-footer.md : Footer to append to the generated term list document
│ ├── termlist-header.md : Header to prepend to the generated term list document
│ ├── terms.tmpl : A Jinja2 template to format the Quick Reference Guide
│ └── workflow_diagram.png : Figure used in README.md to show how to create a new version of the standard
├── dist : GENERATED Distribution files generated by build.py
  ├── dwc_terms.csv : GENERATED CSV file with the recommended Darwin Core terms, definitions, etc.
  ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row
  └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column
├── build
  ├── build.py           : Build script to generate distribution files from the normative document
│ └── config : Configuration files for build.py
  ├── index.tmpl       : Template for index.html
│ └── terms.csv : Configuration for the recommended terms, incl. order, labels, examples
├── docs
│ ├── doe : Degree of Establishment Controlled Vocabulary List of Terms
│ ├── em : Establishment Means Controlled Vocabulary List of Terms
│ ├── list : Darwin Core List of Terms documents
│ ├── namespace : Darwin Core namespace policy
│ ├── pw : Pathway Controlled Vocabulary List of Terms
│ ├── rdf : Darwin Core RDF Guide
│ ├── simple : Simple Darwin Core Guide
│ ├── terms
│ │ └── index.md : Content for Quick Reference Guide generation using Jekyll
│ │
│ ├── text : Darwin Core Text Guide (Darwin Core Archive specification)
│ ├── xml : Darwin Core XML Guide
│ ├── _config.yml : Jekyll site configuration for Quick Reference Guide
│ ├── CNAME : Canonical Name record for dwc.tdwg.org
│ └── index.md : Header for Darwin Core web site generation using Jekyll
├── .github
│ ├── CONTRIBUTING.md : Guide on how to contribute to Darwin Core
│ └── ISSUE_TEMPLATE.md : Template for issues
├── vocabulary
│ └── term_versions.csv : Darwin Core term versions, contains the complete history of the terms
└── .gitignore : Files and directories to be ignored by git
├── .gitignore : Files and directories to be ignored by git
├── LICENSE : Repository license
└── README.md : Description of this repository
```
## Contributors
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For this repository:
> Darwin Core maintenance group, Biodiversity Information Standards (TDWG) (2014). Darwin Core. Zenodo. https://doi.org/10.5281/zenodo.592792
> Darwin Core Maintenance Interest Group, Biodiversity Information Standards (TDWG) (2014). Darwin Core. Zenodo. https://doi.org/10.5281/zenodo.592792
The citation above represents all versions of the repository. Specific [versions/releases](https://github.com/tdwg/dwc/releases) from 2011 onwards are also deposited on Zenodo.