mirror of https://github.com/tdwg/dwc.git
Merge branch 'dwc_cleanup' into website_design
This commit is contained in:
Peter Desmet
commit
b5cfc6c302
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add DOI explanations
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type:
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definition: 'The nature or genre of the resource. For Darwin Core, recommended best practice is to use the name of the class that defines the root of the record.'
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comment: 'Examples: "StillImage", "MovingImage", "Sound", "PhysicalObject", "Event", "Text". For discussion see http://terms.tdwg.org/wiki/dwc:type'
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details: http://dublincore.org/usage/terms/history/#typeT-001
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modified:
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definition: 'The most recent date-time on which the resource was changed. For Darwin Core, recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).'
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comment: 'Examples: "1963-03-08T14:07-0600" is 8 Mar 1963 2:07pm in the time zone six hours earlier than UTC, "2009-02-20T08:40Z" is 20 Feb 2009 8:40am UTC, "1809-02-12" is 12 Feb 1809, "1906-06" is Jun 1906, "1971" is just that year, "2007-03-01T13:00:00Z/2008-05-11T15:30:00Z" is the interval between 1 Mar 2007 1pm UTC and 11 May 2008 3:30pm UTC, "2007-11-13/15" is the interval between 13 Nov 2007 and 15 Nov 2007. For discussion see http://terms.tdwg.org/wiki/dwc:modified'
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details: http://dublincore.org/usage/terms/history/#modified-003
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language:
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definition: 'A language of the resource. Recommended best practice is to use a controlled vocabulary such as RFC 4646 [RFC4646].'
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comment: 'Examples: "en" for English, "es" for Spanish. For discussion see http://terms.tdwg.org/wiki/dwc:language'
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details: http://dublincore.org/usage/terms/history/#languageT-001
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license:
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definition: 'A legal document giving official permission to do something with the resource.'
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comment: 'Examples: "http://creativecommons.org/publicdomain/zero/1.0/legalcode", "http://creativecommons.org/licenses/by/4.0/legalcode". For discussion see http://terms.tdwg.org/wiki/dwc:license'
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details: http://dublincore.org/usage/terms/history/#license-002
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rightsHolder:
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definition: 'A person or organization owning or managing rights over the resource.'
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comment: 'Example: "The Regents of the University of California.". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder'
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details: http://dublincore.org/usage/terms/history/#rightsHolder-002
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accessRights:
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definition: 'Information about who can access the resource or an indication of its security status. Access Rights may include information regarding access or restrictions based on privacy, security, or other policies.'
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comment: 'Example: "not-for-profit use only". For discussion see http://terms.tdwg.org/wiki/dwc:accessRights'
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details: http://dublincore.org/usage/terms/history/#accessRights-002
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bibliographicCitation:
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definition: 'A bibliographic reference for the resource as a statement indicating how this record should be cited (attributed) when used. Recommended practice is to include sufficient bibliographic detail to identify the resource as unambiguously as possible.'
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comment: 'Examples: "Ctenomys sociabilis (MVZ 165861)" for a specimen, "Oliver P. Pearson. 1985. Los tuco-tucos (genera Ctenomys) de los Parques Nacionales Lanin y Nahuel Huapi, Argentina Historia Natural, 5(37):337-343." for a Taxon. For discussion see http://terms.tdwg.org/wiki/dwc:bibliographicCitation'
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details: http://dublincore.org/usage/terms/history/#bibliographicCitation-002
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references:
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definition: 'A related resource that is referenced, cited, or otherwise pointed to by the described resource.'
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comment: 'Examples: "http://mvzarctos.berkeley.edu/guid/MVZ:Mamm:165861"; "http://www.catalogueoflife.org/annual-checklist/show_species_details.php?record_id=6197868". For discussion see http://terms.tdwg.org/wiki/dwc:references'
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details: http://dublincore.org/usage/terms/history/#references-003
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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
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<title>Darwin Core Terms: A quick reference guide</title>
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<link rel="stylesheet" href="bootstrap.min.css">
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</head>
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#def showTerm($t)
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#if $t.uri is not None
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<a name="$t.name"></a>
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<dl class="dl-horizontal">
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<dt>Name</dt>
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<dd><strong>$t.name</strong></dd>
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<dt>Identifier</dt>
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<dd>$t.uri</dd>
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#if $t.class is not None
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<dt>Class</dt>
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<dd>$t.class</dd>
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#end if
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<dt>Definition</dt>
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<dd>$t.definition</dd>
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<dt>Comment</dt>
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<dd>$t.comment</dd>
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<dt>Details</dt>
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<dd><a href="$t.version">$t.version</a></dd>
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</dl>
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<hr/>
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#end if
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#end def
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<body>
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<div class="container">
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<div class="jumbotron">
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<h1>Darwin Core Term Reference</h1>
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</div>
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#for $group in $groups
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#if $group.uri is not None
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<h4><a href="#$group.name">$group.name</a></h4>
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#else
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<h4>$group.name</h4>
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#end if
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<p>
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#set $sep = ''
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#for $term in $group.terms
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$sep <a href="#$term.name">$term.name</a>
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#set $sep = '|'
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#end for
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</p>
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#end for
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<hr/>
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#for $t in $groups
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$showTerm(t)
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#end for
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#for $group in $groups
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#for $t in $group.terms
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$showTerm(t)
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#end for
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#end for
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</div> <!-- /container -->
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</body>
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</html>
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Cheetah==2.4.4
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rdflib==4.1.2
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PyYAML==3.11
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- Record-level Terms:
- DC_type
- DC_modified
- DC_language
- DC_license
- DC_rightsHolder
- DC_accessRights
- DC_bibliographicCitation
- DC_references
- institutionID
- collectionID
- datasetID
- institutionCode
- collectionCode
- datasetName
- ownerInstitutionCode
- basisOfRecord
- informationWithheld
- dataGeneralizations
- dynamicProperties
- Occurrence:
- occurrenceID
- catalogNumber
- recordNumber
- recordedBy
- individualCount
- sex
- lifeStage
- reproductiveCondition
- behavior
- establishmentMeans
- occurrenceStatus
- preparations
- disposition
- associatedMedia
- associatedReferences
- associatedSequences
- associatedTaxa
- otherCatalogNumbers
- occurrenceRemarks
- Organism:
- organismID
- organismName
- organismScope
- associatedOccurrences
- associatedOrganisms
- previousIdentifications
- organismRemarks
- MaterialSample:
- materialSampleID
- Event:
- eventID
- fieldNumber
- eventDate
- eventTime
- startDayOfYear
- endDayOfYear
- year
- month
- day
- verbatimEventDate
- habitat
- samplingProtocol
- samplingEffort
- fieldNotes
- eventRemarks
- DC_Location:
- locationID
- higherGeographyID
- higherGeography
- continent
- waterBody
- islandGroup
- island
- country
- countryCode
- stateProvince
- county
- municipality
- locality
- verbatimLocality
- minimumElevationInMeters
- maximumElevationInMeters
- verbatimElevation
- minimumDepthInMeters
- maximumDepthInMeters
- verbatimDepth
- minimumDistanceAboveSurfaceInMeters
- maximumDistanceAboveSurfaceInMeters
- locationAccordingTo
- locationRemarks
- decimalLatitude
- decimalLongitude
- geodeticDatum
- coordinateUncertaintyInMeters
- coordinatePrecision
- pointRadiusSpatialFit
- verbatimCoordinates
- verbatimLatitude
- verbatimLongitude
- verbatimCoordinateSystem
- verbatimSRS
- footprintWKT
- footprintSRS
- footprintSpatialFit
- georeferencedBy
- georeferencedDate
- georeferenceProtocol
- georeferenceSources
- georeferenceVerificationStatus
- georeferenceRemarks
- GeologicalContext:
- geologicalContextID
- earliestEonOrLowestEonothem
- latestEonOrHighestEonothem
- earliestEraOrLowestErathem
- latestEraOrHighestErathem
- earliestPeriodOrLowestSystem
- latestPeriodOrHighestSystem
- earliestEpochOrLowestSeries
- latestEpochOrHighestSeries
- earliestAgeOrLowestStage
- latestAgeOrHighestStage
- lowestBiostratigraphicZone
- highestBiostratigraphicZone
- lithostratigraphicTerms
- group
- formation
- member
- bed
- Identification:
- identificationID
- identificationQualifier
- typeStatus
- identifiedBy
- dateIdentified
- identificationReferences
- identificationVerificationStatus
- identificationRemarks
- Taxon:
- taxonID
- scientificNameID
- acceptedNameUsageID
- parentNameUsageID
- originalNameUsageID
- nameAccordingToID
- namePublishedInID
- taxonConceptID
- scientificName
- acceptedNameUsage
- parentNameUsage
- originalNameUsage
- nameAccordingTo
- namePublishedIn
- namePublishedInYear
- higherClassification
- kingdom
- phylum
- class
- order
- family
- genus
- subgenus
- specificEpithet
- infraspecificEpithet
- taxonRank
- verbatimTaxonRank
- scientificNameAuthorship
- vernacularName
- nomenclaturalCode
- taxonomicStatus
- nomenclaturalStatus
- taxonRemarks
- ResourceRelationship:
- resourceRelationshipID
- resourceID
- relatedResourceID
- relationshipOfResource
- relationshipAccordingTo
- relationshipEstablishedDate
- relationshipRemarks
- MeasurementOrFact:
- measurementID
- measurementType
- measurementValue
- measurementAccuracy
- measurementUnit
- measurementDeterminedBy
- measurementDeterminedDate
- measurementMethod
- measurementRemarks
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#!/usr/bin/env python
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'''
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easy_install pip
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pip install -r requirements.txt
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'''
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import yaml
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from Cheetah.Template import Template
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from rdflib import Graph, URIRef, Namespace, Literal
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from rdflib.namespace import RDFS
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DWC=Namespace("http://rs.tdwg.org/dwc/terms/")
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DC=Namespace("http://purl.org/dc/terms/")
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DWCA=Namespace("http://rs.tdwg.org/dwc/terms/attributes/")
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def buildHtml():
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print """building html files"""
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html = Template(file="recommended.tmpl", searchList=[parseTerms()])
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recommended = open("recommended.html", "w")
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recommended.write(str(html))
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recommended.close()
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def buildDownloads():
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print """building downloads"""
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print """TBD"""
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def getTerm(name, g):
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t={}
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if name.startswith("DC_"):
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name=name[3:]
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uri=DC[name]
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t["name"]="dcterms:"+name
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elif name.find(" ") > 0:
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uri=None
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t["name"]=name
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else:
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uri=DWC[name]
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t["name"]=name
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t["uri"]=uri
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t["class"]=g.value(subject=uri, predicate=DWCA.organizedInClass)
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t["definition"]=g.value(subject=uri, predicate=RDFS.comment)
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t["comment"]=g.value(subject=uri, predicate=DC.description)
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t["version"]=g.value(subject=uri, predicate=DC.hasVersion)
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return t
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def parseTerms():
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with open('term_order.yaml', 'r') as f:
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order = yaml.load(f)
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with open('dc.yaml', 'r') as dcf:
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dc = yaml.load(dcf)
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g = Graph()
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g.parse("../terms/dwc_normative.rdf")
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for t in dc:
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uri=DC[t]
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g.add( (uri, RDFS.comment, Literal(dc[t]["definition"])) )
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g.add( (uri, DC.description, Literal(dc[t]["comment"])) )
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g.add( (uri, DC.hasVersion, URIRef(dc[t]["details"])) )
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data={}
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groups=[]
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for groupData in order:
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group=getTerm(sorted(groupData.keys())[0], g)
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groups.append(group)
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group["terms"]=[]
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for t in sorted(groupData.values())[0]:
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group["terms"].append(getTerm(t, g))
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data["groups"]=groups
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# print data
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return data
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if __name__ == "__main__":
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buildHtml()
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buildDownloads()
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