diff --git a/README.md b/README.md index dae5db2..c258d8c 100644 --- a/README.md +++ b/README.md @@ -31,6 +31,8 @@ The repository structure is described below. Files/directories indicated with `G │ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary │ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary │ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary +│ ├── xml : Directory for build script and configs for XML extension definitions +│ ├── ext : Directory of GENERATED XML extension definitions │ ├── README.md : Workflow for generating a new version of the vocabulary │ ├── build-termlist.ipynb : Juyter notebook to construct the term list │ ├── build-temlist.py : Script to build Markdown pages that provide term metadata for complex vocabularies @@ -43,6 +45,7 @@ The repository structure is described below. Files/directories indicated with `G │ ├── terms.tmpl : A Jinja2 template to format the Quick Reference Guide │ └── workflow_diagram.png : Figure used in README.md to show how to create a new version of the standard ├── dist : GENERATED Distribution files generated by build.py +│   ├── all_dwc_vertical.csv : GENERATED CSV file with all Darwin Core terms as a column │   ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row │   └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column │ diff --git a/dist/all_dwc_vertical.csv b/dist/all_dwc_vertical.csv new file mode 100644 index 0000000..48ca90c --- /dev/null +++ b/dist/all_dwc_vertical.csv @@ -0,0 +1,206 @@ +type +modified +language +license +rightsHolder +accessRights +bibliographicCitation +references +institutionID +collectionID +datasetID +institutionCode +collectionCode +datasetName +ownerInstitutionCode +basisOfRecord +informationWithheld +dataGeneralizations +dynamicProperties +occurrenceID +catalogNumber +recordNumber +recordedBy +recordedByID +individualCount +organismQuantity +organismQuantityType +sex +lifeStage +reproductiveCondition +caste +behavior +vitality +establishmentMeans +degreeOfEstablishment +pathway +georeferenceVerificationStatus +occurrenceStatus +associatedMedia +associatedOccurrences +associatedReferences +associatedTaxa +otherCatalogNumbers +occurrenceRemarks +organismID +organismName +organismScope +associatedOrganisms +previousIdentifications +organismRemarks +materialEntityID +preparations +disposition +verbatimLabel +associatedSequences +materialEntityRemarks +materialSampleID +eventID +parentEventID +eventType +fieldNumber +eventDate +eventTime +startDayOfYear +endDayOfYear +year +month +day +verbatimEventDate +habitat +samplingProtocol +sampleSizeValue +sampleSizeUnit +samplingEffort +fieldNotes +eventRemarks +locationID +higherGeographyID +higherGeography +continent +waterBody +islandGroup +island +country +countryCode +stateProvince +county +municipality +locality +verbatimLocality +minimumElevationInMeters +maximumElevationInMeters +verbatimElevation +verticalDatum +minimumDepthInMeters +maximumDepthInMeters +verbatimDepth +minimumDistanceAboveSurfaceInMeters +maximumDistanceAboveSurfaceInMeters +locationAccordingTo +locationRemarks +decimalLatitude +decimalLongitude +geodeticDatum +coordinateUncertaintyInMeters +coordinatePrecision +pointRadiusSpatialFit +verbatimCoordinates +verbatimLatitude +verbatimLongitude +verbatimCoordinateSystem +verbatimSRS +footprintWKT +footprintSRS +footprintSpatialFit +georeferencedBy +georeferencedDate +georeferenceProtocol +georeferenceSources +georeferenceRemarks +geologicalContextID +earliestEonOrLowestEonothem +latestEonOrHighestEonothem +earliestEraOrLowestErathem +latestEraOrHighestErathem +earliestPeriodOrLowestSystem +latestPeriodOrHighestSystem +earliestEpochOrLowestSeries +latestEpochOrHighestSeries +earliestAgeOrLowestStage +latestAgeOrHighestStage +lowestBiostratigraphicZone +highestBiostratigraphicZone +lithostratigraphicTerms +group +formation +member +bed +identificationID +verbatimIdentification +identificationQualifier +typeStatus +identifiedBy +identifiedByID +dateIdentified +identificationReferences +identificationVerificationStatus +identificationRemarks +taxonID +scientificNameID +acceptedNameUsageID +parentNameUsageID +originalNameUsageID +nameAccordingToID +namePublishedInID +taxonConceptID +scientificName +acceptedNameUsage +parentNameUsage +originalNameUsage +nameAccordingTo +namePublishedIn +namePublishedInYear +higherClassification +kingdom +phylum +class +order +superfamily +family +subfamily +tribe +subtribe +genus +genericName +subgenus +infragenericEpithet +specificEpithet +infraspecificEpithet +cultivarEpithet +taxonRank +verbatimTaxonRank +scientificNameAuthorship +vernacularName +nomenclaturalCode +taxonomicStatus +nomenclaturalStatus +taxonRemarks +measurementID +parentMeasurementID +measurementType +measurementValue +measurementAccuracy +measurementUnit +measurementDeterminedBy +measurementDeterminedDate +measurementMethod +measurementRemarks +resourceRelationshipID +resourceID +relationshipOfResourceID +relatedResourceID +relationshipOfResource +relationshipAccordingTo +relationshipEstablishedDate +relationshipRemarks