mirror of https://github.com/tdwg/dwc.git
Updating the text guidelines layout. Tables still need to be done
This commit is contained in:
parent
e98ed9d4b5
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@ -1,269 +1,81 @@
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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
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<title>Darwin Core Text Guide</title>
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<link href="http://rs.tdwg.org/dwc/" rel="schema.DwC">
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<meta content="Darwin Core Text Guide" name="DC.title">
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<meta content="Guidelines for implementing Darwin Core in Text files." name=
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"DC.description">
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<meta content="biodiversity, standards" name="DC.subject">
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<meta content="Darwin Core Task Group" name="DC.creator">
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<meta content="Tim Robertson (GBIF)" name="DC.contributor">
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<meta content="John Wieczorek (MVZ)" name="DC.contributor">
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<meta content="Markus Döring (GBIF)" name="DC.contributor">
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<meta content="Renato De Giovanni (CRIA)" name="DC.contributor">
|
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<meta content="Dave Vieglais (KUNHM)" name="DC.contributor">
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<meta content="2009-02-12" name="DC.dateAccepted">
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<meta content="http://rs.tdwg.org/dwc/2009-12-07/terms/guides/text/" name=
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"DC.replaces">
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<meta content="2014-11-08" name="DC.modified">
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<meta content="http://rs.tdwg.org/dwc/2014-11-08/terms/guides/text" name=
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"DC.identifier">
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<meta content="text/html" name="DC.format">
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<meta content="Biodiversity Information Standards TDWG" name="DC.publisher">
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<meta content="http://creativecommons.org/licenses/by/4.0/legalcode" name=
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"DC.license">
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<meta content="public" name="DC.accessRights">
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<meta content="Darwin Core Text Guide. 2014" name="DC.bibliographicCitation">
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<meta content="en" name="DC.language">
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<link href="http://www.tdwg.org/" rel="meta">
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<link href="../../../DarwinCore_files/default.css" rel="stylesheet" type=
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"text/css">
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<script src="../../../DarwinCore_files/default.js" type="text/javascript"></script>
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<meta charset="utf-8">
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<title>Darwin Core Text Guide</title>
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<link href="http://rs.tdwg.org/dwc/" rel="schema.DwC">
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<meta content="Darwin Core Text Guide" name="DC.title">
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<meta content="Guidelines for implementing Darwin Core in Text files." name="DC.description">
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<meta name="DC.modified" content="2015-01-13"><!-- Also update in footer -->
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<meta name="dcterms.subject" content="biodiversity, standards">
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<meta name="dcterms.creator" content="Darwin Core Task Group">
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<meta name="dcterms.contributor" content="John Wieczorek (MVZ)">
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<meta name="dcterms.contributor" content="Markus Döring (GBIF)">
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<meta name="dcterms.contributor" content="Renato De Giovanni (CRIA)">
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<meta name="dcterms.contributor" content="Tim Robertson (GBIF)">
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<meta name="dcterms.contributor" content="Dave Vieglais (KUNHM)">
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<meta name="dcterms.contributor" content="Peter Desmet (INBO)">
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<meta name="dcterms.publisher" content="Biodiversity Information Standards (TDWG)">
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<meta name="dcterms.license" content="http://creativecommons.org/licenses/by/4.0/legalcode">
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<meta name="dcterms.language" content="en">
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<link rel="stylesheet" type="text/css" href="../../assets/bootstrap.min.css">
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<link rel="stylesheet" type="text/css" href="../../assets/main.css">
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<link href="http://www.tdwg.org/" rel="meta">
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</head>
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<body>
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<table border="0" cellpadding="0" cellspacing="0" style=
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"background-color: #617394" width="100%">
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<tbody>
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<tr>
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<td>
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<a href="http://www.tdwg.org"><img alt=
|
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"Biodiversity Information Standards (TDWG) logo" height="89" src=
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"../../../DarwinCore_files/TDWGlogo_Twiki.gif" width="148"></a>
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</td>
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<td align="right" height="100" valign="top" width="100%"></td>
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</tr>
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</tbody>
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</table>
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<table border="0" cellpadding="0" cellspacing="0" width="100%">
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<tbody>
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<tr>
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<td style="background-color: #617394" width="15%">
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<div id="menu">
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||||
<div class="topMenu" id="nav">
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<div class="menuItem level1">
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<a href="../../../index.htm" onfocus=
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||||
"blurLink(this);">Introduction</a>
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</div>
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<!-- <div class="menuItem"><a href="../../../index.htm#glossary" onfocus="blurLink(this);">Glossary</a></div> -->
|
||||
|
||||
<div class="subMenu">
|
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<div class="menuItem">
|
||||
<a href="../../../index.htm#references" onfocus=
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||||
"blurLink(this);">References</a>
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||||
</div>
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</div>
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||||
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<div class="menuItem level1">
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<a href="../../index.htm" onfocus="blurLink(this);">Quick
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Reference Guide</a>
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</div>
|
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|
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<div class="menuItem level1">
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<a href="../../simple/index.htm" onfocus=
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"blurLink(this);">Simple Darwin Core</a>
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</div>
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|
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<div class="separator">
|
||||
<hr>
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</div>
|
||||
|
||||
<div class="menuItem level1">
|
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<a href="../../namespace/index.htm" onfocus=
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||||
"blurLink(this);">Namespace Policy</a>
|
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</div>
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|
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<div class="menuItem level1 highlighted">
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<a href="../text/index.htm" onfocus="blurLink(this);">Text
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Guide</a>
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</div>
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<div class="subMenu">
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<div class="menuItem">
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<a href="./index.htm#introduction" onfocus=
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||||
"blurLink(this);">Introduction</a>
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</div>
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</div>
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||||
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<div class="subMenu">
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||||
<div class="menuItem">
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<a href="./index.htm#metafile" onfocus=
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"blurLink(this);">Metafile Content</a>
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</div>
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</div>
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|
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<div class="subMenu">
|
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<div class="menuItem">
|
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<a href="./index.htm#implement" onfocus=
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"blurLink(this);">Implementation Guide</a>
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</div>
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</div>
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<div class="subMenu">
|
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<div class="menuItem">
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<a href="./index.htm#database" onfocus=
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"blurLink(this);">Database Example</a>
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</div>
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</div>
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|
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<div class="subMenu">
|
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<div class="menuItem">
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<a href="./index.htm#tools" onfocus=
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"blurLink(this);">Tools</a>
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</div>
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</div>
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<div class="menuItem level1">
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<a href="../xml/index.htm" onfocus="blurLink(this);">XML
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Guide</a>
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</div>
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<div class="separator">
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<hr>
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</div>
|
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|
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<div class="menuItem level1">
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<a href="../../history/index.htm" onfocus=
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"blurLink(this);">Complete History</a>
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</div>
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||||
|
||||
<div class="menuItem level1">
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||||
<a href="../../history/decisions/index.htm" onfocus=
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"blurLink(this);">Decision History</a>
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</div>
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|
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<div class="menuItem level1">
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<a href="../../history/dwctoabcd/index.htm" onfocus=
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"blurLink(this);">Mapping to ABCD</a>
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</div>
|
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|
||||
<div class="menuItem level1">
|
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<a href="../../history/versions/index.htm" onfocus=
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||||
"blurLink(this);">Mapping to Old Versions</a>
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||||
</div>
|
||||
<nav class="navbar navbar-default navbar-fixed-top">
|
||||
<div class="container">
|
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<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target=".navbar-collapse">
|
||||
<span class="sr-only">Toggle navigation</span>
|
||||
<span class="icon-bar"></span><span class="icon-bar"></span><span class="icon-bar"></span>
|
||||
</button>
|
||||
<a class="navbar-brand" href="../index.html">Darwin Core</a>
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</div>
|
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</div>
|
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</td>
|
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<div class="collapse navbar-collapse">
|
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<ul class="nav navbar-nav">
|
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<li><a href="../terms/index.html">Terms</a></li>
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<li><a href="../examples/index.html">Examples</a></li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Reference <span class="caret"></span></a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li><a href="../../change_policy.html">Change policy</a></li>
|
||||
<li class="divider"></li>
|
||||
<li><a href="../../simple_dwc.html">Simple Darwin Core</a></li>
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||||
<li class="divider"></li>
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<li class="active"><a href="../text/index.html">Text guide</a></li>
|
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<li><a href="../xml/index.html">XML guide</a></li>
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<li class="disabled"><a href="../rdf/index.html">RDF guide</a></li>
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<li class="divider"></li>
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<li><a href="../../terms/history.html">Term history</a></li>
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<li><a href="../../terms/decisions.html">Term decisions</a></li>
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<li><a href="../../terms/mappings.html">Term mappings</a></li>
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</ul>
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</li>
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</ul>
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<ul class="nav navbar-nav navbar-right">
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<li><a href="../../resources/index.html">Resources</a></li>
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<li><a href="http://github.com/tdwg/dwc">Source</a></li>
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||||
</ul>
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</div>
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</div>
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</nav>
|
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<div class="content">
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||||
<div class="container">
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<div class="page-header">
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<h1>Darwin Core Text Guide</h1>
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</div>
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<td>
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<center><h1>Darwin Core Text Guide</h1></center>
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<p></p>
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<table cellspacing="0" class="docinfo">
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<tbody>
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<tr>
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<th>Title:</th>
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<td>Darwin Core Text Guide</td>
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</tr>
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<tr>
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<th>Date Issued:</th>
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<td>2009-02-12</td>
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</tr>
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<tr>
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<th>Date Modified:</th>
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<td>2014-11-08</td>
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</tr>
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<tr>
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<th>Abstract:</th>
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<td>Guidelines for implementing Darwin Core in Text files.</td>
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</tr>
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<tr>
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<th>Contributors:</th>
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<td>Tim Robertson (GBIF), Markus Döring (GBIF), John
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Wieczorek (MVZ), Renato De Giovanni (CRIA), Dave Vieglais
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(KUNHM)</td>
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</tr>
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<tr>
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<th>Legal:</th>
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||||
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<td>This document is governed by the standard legal, copyright,
|
||||
licensing provisions and disclaimers issued by the Taxonomic
|
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Databases Working Group.</td>
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</tr>
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<tr>
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<th>Part of TDWG Standard:</th>
|
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<td>
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<a href=
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"http://www.tdwg.org/standards/450/">http://www.tdwg.org/standards/450/</a>
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</td>
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</tr>
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<tr>
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<th>Creator:</th>
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<td>Darwin Core Task Group</td>
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</tr>
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<tr>
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<th>Identifier:</th>
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<td>http://rs.tdwg.org/dwc/2014-11-08/terms/guides/text/</td>
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</tr>
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<tr>
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<th>Latest Version:</th>
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<td>
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<a href=
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"http://rs.tdwg.org/dwc/terms/guides/text/index.htm">http://rs.tdwg.org/dwc/terms/guides/text/</a>
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</td>
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</tr>
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<tr>
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<th>Replaces:</th>
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<td>
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<a href=
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"http://rs.tdwg.org/dwc/2009-12-07/terms/guides/text/index.htm">
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http://rs.tdwg.org/dwc/2009-12-07/terms/guides/text/</a>
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</td>
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</tr>
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<tr>
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<th>Document Status:</th>
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<td>Current Standard</td>
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</tr>
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</tbody>
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</table>
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</td>
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</tr>
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</tbody>
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</table><a id="introduction" name="introduction"></a>
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<h2>1. Introduction</h2><b>Audience</b>: This document is targeted toward
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<h2 id="introduction">1. Introduction</h2>
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<p><b>Audience</b>: This document is targeted toward
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those who wish to use or share information based on the Darwin Core terms
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using text files. It provides technical details on how to construct these
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files and complementary metadata files that describe their content.
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files and complementary metadata files that describe their content.</p>
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<p>This document provides guidelines for formatting and sharing Darwin Core
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terms [<a href="../../index.htm">TERMS</a>] in <em>fielded text</em> formats,
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format and having the first row include Darwin Core standard term names) can
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be shared in a single file, while a non-standard text file can be understood
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using an [<a href="http://www.w3.org/XML/">XML</a>] metafile to describe its
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contents and formatting.<br>
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<img src="images/usage.png"><br>
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More complex structure can be shared in multiple related files. The
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contents and formatting.</p>
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<img src="images/usage.png">
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<p>More complex structure can be shared in multiple related files. The
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description of content and relationships between files can be achieved using
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the metafile. This guideline makes recommendations for the simple case of a
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<em>core</em> file, upon which Darwin Core <em>records</em> are based, and
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contains one or more identifications for those specimens, with one
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identification per row in the extension file, and with an identifier to the
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specimen for each identification row. This example would allow many
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identifications to be associated with each specimen.</p>
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identifications to be associated with each specimen.</p>
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<h3 id="simple">1.1 Simple Example Metafile Content</h3>
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<p>A simple comma separated values
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(CSV) data file with the following content:</p>
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<h3>1.1 Simple Example Metafile Content</h3>A simple comma separated values
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(CSV) data file with the following content:
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<pre class="example">
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ID,Species,Count
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123,"Cryptantha gypsophila Reveal & C.R. Broome",12
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124,"Buxbaumia piperi",2
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</pre>can be described with the following Darwin Core metafile:
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</pre>
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<p>can be described with the following Darwin Core metafile:</p>
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<pre class="example">
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<?xml version="1.0" encoding="UTF-8"?>
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<archive xmlns="http://rs.tdwg.org/dwc/text/"
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@ -312,8 +132,10 @@ ID,Species,Count
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</core>
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</archive>
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</pre>
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<p>These same data could be understood without the metafile if the first row
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of the CSV file contained the term names:
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of the CSV file contained the term names:</p>
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<pre class="example">
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type,institutionCode,collectionCode,catalogNumber,scientificName,individualCount,datasetID
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PhysicalObject,ANSP,PH,123,"Cryptantha gypsophila Reveal & C.R. Broome",12,urn:lsid:tim.lsid.tdwg.org:collections:1
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@ -341,9 +163,9 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
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another system. It could be that this system would then serve the data in
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another format such as XML.</li>
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</ul>
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<p><a id="metafile" name="metafile"></a>
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<h2>2. Metafile Content</h2>
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||||
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<h2 id="metafile">2. Metafile Content</h2>
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<p>The text metafile schema [<a href=
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"../../../text/tdwg_dwc_text.xsd">TEXTSCHEMA</a>] provides technical details
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@ -352,12 +174,14 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
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elements and attributes, with descriptions and specifications for their use
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in a metafile, are described in the following table.</p>
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<h3>2.1 The <archive> element</h3>The <archive> element is the
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<h3>2.1 The <archive> element</h3>
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<p>The <archive> element is the
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container for the list of related files (one core and zero or more
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extensions). The <archive> element has just one attribute,
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<em>metadata</em>.
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<em>metadata</em>.</p>
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<p></p>Attributes
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<h4>Attributes</h4>
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<table class="border">
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<thead>
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@ -433,12 +257,11 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
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</tr>
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</tbody>
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</table>
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<p>
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<h3><a id="coreTag" name="coreTag">2.2 The <core> or <extension>
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element</a></h3>
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<p></p>Attributes
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<h3 id="coreTag">2.2 The <core> or <extension> element</h3>
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<h4>Attributes</h4>
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<table class="border">
|
||||
<thead>
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|
@ -689,9 +512,9 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
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</tr>
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</tbody>
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</table>
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<p>
|
||||
|
||||
<h3><a id="files" name="files">2.3 The <files> element</a></h3>
|
||||
|
||||
<h3 id="files">2.3 The <files> element</h3>
|
||||
|
||||
<p>The files element must contain one or more <location> elements, each
|
||||
defining where a file resides. Each core or extension entity can be composed
|
||||
|
@ -699,7 +522,7 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
|
|||
<location> element multiple times, once for each file that makes up the
|
||||
entity.</p>
|
||||
|
||||
<p></p>Elements
|
||||
<h4>Elements</h4>
|
||||
|
||||
<table class="border">
|
||||
<thead>
|
||||
|
@ -730,15 +553,15 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
|
|||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
<p>
|
||||
|
||||
<h3><a id="fieldTag" name="fieldTag">2.4 The <field>
|
||||
element</a></h3>The field element is used to specify the location and content
|
||||
|
||||
<h3 id="fieldTag">2.4 The <field> element</h3>
|
||||
<p>The field element is used to specify the location and content
|
||||
of data within a file. There must be one field element for every term being
|
||||
shared for the entity, whether explicitly or through the use of a default
|
||||
value for all rows in the file.
|
||||
value for all rows in the file.</p>
|
||||
|
||||
<p></p>Attributes
|
||||
<h4>Attributes</h4>
|
||||
|
||||
<table class="border">
|
||||
<thead>
|
||||
|
@ -806,11 +629,13 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
|
|||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
<p><a id="implement" name="implement"></a>
|
||||
|
||||
<h2>3. Implementation Guide</h2>
|
||||
|
||||
<h3>3.1 Extension example</h3>The following example illustrates the use of
|
||||
|
||||
<h2 id="implement">3. Implementation Guide</h2>
|
||||
|
||||
<h3>3.1 Extension example</h3>
|
||||
<p>The following example illustrates the use of
|
||||
extensions. In this example there are three files in the archive, all of
|
||||
which are located in the same directory as the metafile. The whales.txt file
|
||||
acts as a core file of Taxon records. The whales.txt file is extended by two
|
||||
|
@ -823,8 +648,10 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
|
|||
files are related to the core file by the taxonNameID fields. Presumably,
|
||||
this archive contains information about whale species, type specimen records
|
||||
for those species, and lists of countries and the threat status for those
|
||||
species.<br>
|
||||
<img src="images/extension.png"><br>
|
||||
species.</p>
|
||||
|
||||
<img src="images/extension.png">
|
||||
|
||||
<pre class="example">
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<archive xmlns="http://rs.tdwg.org/dwc/text/"
|
||||
|
@ -870,16 +697,20 @@ PhysicalObject,ANSP,PH,124,"Buxbaumia piperi",2,urn:lsid:tim.lsid.tdwg.org:colle
|
|||
<field index="3" term="http://rs.tdwg.org/dwc/terms/occurrenceStatus"/>
|
||||
</extension>
|
||||
</archive>
|
||||
</pre><a id="database" name="database"></a>
|
||||
</pre>
|
||||
|
||||
<h2>4. Database Example</h2>
|
||||
|
||||
<h3>4.1 MySQL</h3>It is very easy to produce <em>fielded text</em> using the
|
||||
<h2 id="database">4. Database Example</h2>
|
||||
|
||||
<h3>4.1 MySQL</h3>
|
||||
|
||||
<p>It is very easy to produce <em>fielded text</em> using the
|
||||
<code>SELECT INTO outfile</code> command from MySQL. The encoding of the
|
||||
resulting file will depend on the server variables and collations used, and
|
||||
might need to be modified before the operation is done. Note that MySQL will
|
||||
export NULL values as \N by default. Use the IFNULL() function as shown in
|
||||
the following example to avoid this.
|
||||
the following example to avoid this.</p>
|
||||
|
||||
<pre class="example">
|
||||
SELECT
|
||||
IFNULL(id, ''), IFNULL(scientific_name, ''), IFNULL(count,'')
|
||||
|
@ -891,30 +722,43 @@ FROM
|
|||
dwc;
|
||||
</pre><a id="tools" name="tools"></a>
|
||||
|
||||
<h2>5. Tools</h2>
|
||||
<h2 id="tools">5. Tools</h2>
|
||||
|
||||
<p>For tools and applications, including a Java-based application to read
|
||||
Darwin Core text archives, see the <i>Darwin Core Tools and Applications</i>
|
||||
page [<a href=
|
||||
"https://github.com/tdwg/dwc-documentation/blob/master/doc/resources.md">TOOLS</a>].</p>
|
||||
<hr>
|
||||
<!-- Footer -->
|
||||
"https://github.com/tdwg/dwc-documentation/blob/master/doc/resources.md">TOOLS</a>].</p>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<p>Except where otherwise noted, content on this site is licensed under a
|
||||
<a href="http://creativecommons.org/licenses/by/4.0/" rel="license">Creative
|
||||
Commons Attribution 4.0 International License</a>.</p>
|
||||
|
||||
<p><a href="http://creativecommons.org/licenses/by/4.0/" rel=
|
||||
"license"><img alt="Creative Commons License" id="creative_commons_icon" src=
|
||||
"http://i.creativecommons.org/l/by/4.0/88x31.png"></a> Copyright 2011-2014 -
|
||||
Biodiversity Information Standards - TDWG - <a href=
|
||||
"http://www.tdwg.org/about-tdwg/contact-us/">Contact Us</a><br>
|
||||
<!-- The following is used to register Google Analytics for Darwin Core -->
|
||||
<script src="http://www.google-analytics.com/urchin.js" type=
|
||||
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|
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|
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|
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|
||||
<footer class="footer">
|
||||
<div class="container">
|
||||
<div class="row">
|
||||
<div class="col-xs-4">
|
||||
<p><a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png"/></a></p>
|
||||
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|
||||
<div class="col-xs-8">
|
||||
<ul class="list-inline pull-right">
|
||||
<li>Page last modified on 2015-01-13</li>
|
||||
<li><a href="https://github.com/tdwg/dwc/blob/gh-pages/resources.html">Edit on GitHub</a></li>
|
||||
</ul>
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
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|
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Reference in New Issue