mirror of https://github.com/tdwg/dwc.git
591 lines
32 KiB
XML
591 lines
32 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<xs:schema version="0.1" xmlns:xs="http://www.w3.org/2001/XMLSchema"
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targetNamespace="http://rs.nordgen.org/dwc/germplasm/0.1/terms/"
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xmlns:dwc="http://rs.tdwg.org/dwc/terms/"
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xmlns:gr="http://rs.nordgen.org/dwc/germplasm/0.1/terms/"
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attributeFormDefault="qualified"
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elementFormDefault="qualified"
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>
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<!--
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*****************************************
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WARNING! DRAFT SCHEMA! UNDER DEVELOPEMENT
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This is the first draft version 0.1
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*****************************************
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-->
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<!--
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Darwin Core Extension for genetic resources, germplasm
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Draft version January 2009, Dag Endresen (During the Darwin Core workshop in Copenhagen)
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Modified draft version May 2009, Dag Endresen (Preparations for GIGA TAG in Rome, demo of new GBIF IPT)
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Added version to the namespace (ahead of the SINGER GPG2 meeting at USDA in August 2009)
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This draft version 0.1 is now locked, any modifications will be as a new version (0.2)
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#
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What would be the most reasonable namespace to use...?
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Suggestion (for draft version): http://rs.nordgen.org/dwc/germplasm/0.1/terms/
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Alternative (for draft version): http://atlas.nordgen.org/rs/dwc/germplasm/0.1/terms/
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Alternative: http://rs.tdwg.org/dwc/germplasm/0.1/terms/
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Alternative example: http://www.bioversityinternational.org/schemas/dwc/germplasm/0.1/terms/
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#
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Version numbering:
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Suggestion to use the namespace with a 0.x version for the draft versions and proceed to 1.x when a stable version is reached
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Suggestion: http://rs.tdwg.org/dwc/germplasm/0.1/terms/
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#
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Current GCP_Passport (1.05) use the ns: http://generationcp.org/schemas/gcp_passport/1.05
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Previous GCP_Passport use the ns: http://www.ipgri.org/schemas/gcp_pass/1.03
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MCPD namespace: http://www.ipgri.cgiar.org/schemas/mcpd/1.00 (NB! IPGRI is now Bioversity)
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#
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Relevant further information (Germplasm Passport Data):
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http://gcpcr.grinfo.net/include/webservices/schema-documentation.php
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See: http://www.generationcp.org/schemas/documentation/gcp_passport_1.05.xsd.html
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See: http://chm.grinfo.net/index.php?app=data_schema&inc=schema_list
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See: http://wwwdev.ngb.se/portal/index.php?app=data_schema&inc=schema_list
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-->
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<xs:import namespace="http://rs.tdwg.org/dwc/terms/" schemaLocation="http://darwincore.googlecode.com/svn/trunk/xsd/tdwg_dwcterms.xsd"/>
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<!-- ANY GENETIC RESOURCES IDENTIFIER -->
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<xs:element name="anyIdentifier" abstract="true" substitutionGroup="dwc:anyIdentifier"/>
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<!-- ANY GENETIC RESOURCES PROPERTY -->
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<xs:element name="anyProperty" abstract="true" substitutionGroup="dwc:anyProperty"/>
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<!-- ANY GENETIC RESOURCES CLASS TERM -->
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<xs:element name="anyClass" abstract="true" substitutionGroup="dwc:anyClass"/>
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<!-- I simply added germplasm sample ID and sample term here. Is there perhaps a better way...? May 2009, Dag Terje -->
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<!-- ANY GENETIC RESOURCES SAMPLE IDENTIFIER -->
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<xs:element name="anyGermplasmID" abstract="true" substitutionGroup="dwc:anyIdentifier"/>
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<!-- ANY GENETIC RESOURCES SAMPLE TERM -->
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<xs:element name="anyGermplasmTerm" abstract="true" substitutionGroup="dwc:anyProperty"/>
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<!--
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I am testing with gr:anyGermplasmTerm instead of dwc:anySampleTerm as first tested...
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Would this work...? At least for a germplasm demo test version...? (Dag Endresen, 2009-05-13)
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-->
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<!--
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***********************************************************
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Additional terms for the darwin core germplasm sample class
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***********************************************************
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-->
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<!--
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NOTE: Enumeration NOT USED BELOW YET!
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Note that the Enumeration defined below is not used as type definition for any of the relevant terms yet.
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Conflicing with the default type for generic Darwin Core schema...?
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How to solve this to be explored at a higher Darwin Core development/modelling level...
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(Dag Endresen, January 2009, May 2009)
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-->
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<xs:simpleType name="BiologicalStatusCodeEnum">
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<xs:restriction base="xs:int">
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<xs:enumeration value="100"><xs:annotation><xs:documentation>Wild</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="110"><xs:annotation><xs:documentation>Natural wild</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="120"><xs:annotation><xs:documentation>Semi-matural/wild</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="200"><xs:annotation><xs:documentation>Weedy</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="300"><xs:annotation><xs:documentation>Traditional cultivar/landrace</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="400"><xs:annotation><xs:documentation>Breeding/research material</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="410"><xs:annotation><xs:documentation>Breeders line</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="411"><xs:annotation><xs:documentation>Syntetic population</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="412"><xs:annotation><xs:documentation>Hybrid</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="413"><xs:annotation><xs:documentation>Founder stock/base population</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="414"><xs:annotation><xs:documentation>Inbred line (parent of hybrid cultivar)</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="415"><xs:annotation><xs:documentation>Segregating population</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="420"><xs:annotation><xs:documentation>Genetic stock</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="500"><xs:annotation><xs:documentation>Advanced/improved cultivar</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="999"><xs:annotation><xs:documentation>Other (elaborate in remarks)</xs:documentation></xs:annotation></xs:enumeration>
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</xs:restriction>
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</xs:simpleType>
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<xs:simpleType name="SampleAcquisitionEnum">
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<xs:restriction base="xs:int">
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<xs:enumeration value="10"><xs:annotation><xs:documentation>Wild habitat</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="11"><xs:annotation><xs:documentation>Forest/woodland</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="12"><xs:annotation><xs:documentation>Shrubland</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="13"><xs:annotation><xs:documentation>Grassland</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="14"><xs:annotation><xs:documentation>Desert/tundra</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="15"><xs:annotation><xs:documentation>Aquatic habitat</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="20"><xs:annotation><xs:documentation>Farm or cultivated habitat</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="21"><xs:annotation><xs:documentation>Field</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="22"><xs:annotation><xs:documentation>Orchard</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="23"><xs:annotation><xs:documentation>Backyard, kitchen or home garden</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="24"><xs:annotation><xs:documentation>Fallow land</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="25"><xs:annotation><xs:documentation>Pasture</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="26"><xs:annotation><xs:documentation>Farm store</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="27"><xs:annotation><xs:documentation>Threshing floor</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="28"><xs:annotation><xs:documentation>Park</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="30"><xs:annotation><xs:documentation>Market or shop</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="40"><xs:annotation><xs:documentation>Institute, experimental station, research organization, genebank</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="50"><xs:annotation><xs:documentation>Seed company</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="60"><xs:annotation><xs:documentation>Weedy, distributed or ruderal habitat</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="61"><xs:annotation><xs:documentation>Roadside</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="62"><xs:annotation><xs:documentation>Field margin</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="99"><xs:annotation><xs:documentation>Other (elaborate in remarks)</xs:documentation></xs:annotation></xs:enumeration>
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</xs:restriction>
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</xs:simpleType>
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<xs:simpleType name="TypeOfStorageEnum">
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<xs:restriction base="xs:int">
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<xs:enumeration value="10"><xs:annotation><xs:documentation>Seed collection</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="11"><xs:annotation><xs:documentation>Short term</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="12"><xs:annotation><xs:documentation>Medium term</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="13"><xs:annotation><xs:documentation>Long term</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="20"><xs:annotation><xs:documentation>Field collection</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="30"><xs:annotation><xs:documentation>In vitro collection (slow growth)</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="40"><xs:annotation><xs:documentation>Cryopreserved collection</xs:documentation></xs:annotation></xs:enumeration>
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<xs:enumeration value="99"><xs:annotation><xs:documentation>Other (elaborate in remarks)</xs:documentation></xs:annotation></xs:enumeration>
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</xs:restriction>
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</xs:simpleType>
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<!-- Some terms from the earlier DRAFT DarwinCore seems to be modified (Dag Endresen, 2009-05-13) -->
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<!-- dwc:anySamplingEventTerm to dwc:anyEventTerm -->
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<!-- dwc:anySampleID to gr:anyGermplasmID (SampleID is perhaps now OccurrenceID?) -->
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<!-- dwc:anySampleTerm to gr:anyGermplasmTerm -->
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<!-- is GermplasmID the same as dwc:occurrenceID, perhaps GermplasmID is redundant by this dwc term...? -->
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<xs:element name="GermplasmID" substitutionGroup="gr:anyGermplasmID">
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<xs:annotation>
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<xs:documentation>
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Germplasm Sample ID, there used to be a sampleID in a previous DRAFT Darwin Core...?
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Does this mean that we should use occurrenceID also for samples...?
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="BiologicalStatusOfSample" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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(MCPD term: 20): Biological status of sample.
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Wild, Crop wild relative (CWR), Primitive, Traditional cultivar/landrace,
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Breeding line, Genetic stock, Modern cultivar
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(recommended to follow a regulated vocabulary, or preferable the SAMPSTAT code, MCPD term 20).
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="BiologicalStatusOfSampleCode" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 20: Biological status of sample, SAMPSTAT.
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SAMPSTAT codes distinguish wild and primitive cultivars
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from modern cultivars and breeding lines (material under development).
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="GermplasmIdentifier" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term: 11: Accession name, ACCENAME.
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Either a registered or other formal designation given to the accession.
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For example: Rheinische Vorgebirgstrauben;Emma;Avlon
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="CollectingInstituteCode" substitutionGroup="dwc:anyEventTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 4: Collecting institute code, COLLCODE.
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FAO WIEWS institute code for the collecting/gathering institute.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="AncestralData" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 21: Ancestral data, ANCEST.
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Information about either pedigree or other description of ancestral information.
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For example a pedigree 'Hanna/7*Atlas//Turk/8*Atlas',
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or a description 'mutation found in Hanna', 'selection from Irene'.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="PurdyPedigree" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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(MCPD term 21): Ancestral information following the purdy pedigree format.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<!-- Type of storage can be multiple instances, perhaps need to be separate class? -->
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<xs:element name="TypeOfStorage" substitutionGroup="gr:anyGermplasmTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 27: Type of germplasm storage, STORAGE.
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Refer to FAO/IPGRI Genebank Standards 1994 for details on storage type.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<!-- Safety duplication of germplasm as a security copy -->
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<!-- Location of Safety Duplicates as class, multiple instances -->
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<xs:element name="LocationOfSafetyDuplication" substitutionGroup="dwc:anyClass">
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<xs:complexType>
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<xs:sequence>
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<!-- <xs:element ref="dwc:SampleID" minOccurs="1"/> -->
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<xs:element ref="gr:GermplasmID" minOccurs="1"/>
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<xs:element ref="gr:anySafetyDuplicationTerm" minOccurs="0" maxOccurs="unbounded"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<!-- <xs:element name="SampleID" substitutionGroup="dwc:anyIdentifier"/> -->
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<xs:element name="anySafetyDuplicationTerm" abstract="true" substitutionGroup="dwc:anyProperty"/>
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<xs:element name="SafetyDuplicationID" substitutionGroup="dwc:anyIdentifier"/>
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<xs:element name="SafetyDuplicationInstituteCode" substitutionGroup="gr:anySafetyDuplicationTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 26: Location of safety duplicates, DUPLSITE.
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FAO institute code of the institute where a safety duplicate
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of the accession is maintained.
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Example: For Svalbard Global Seed Vault (SGSV), use the FAO WIEWS institute code NOR051.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="SafetyDuplicationInstitute" substitutionGroup="gr:anySafetyDuplicationTerm"/>
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<xs:element name="SafetyDuplicationDate" substitutionGroup="gr:anySafetyDuplicationTerm"/>
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<!-- Treaties and regulations (for PGRFA, Germplasm) -->
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<!--
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List treaty/regulation name, and issuing body,
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and perhaps when sample was included under the regulations
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NB! This class desperatly need to be developed further...!
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Example: ITPGRFA, International Treaty for Plant Genetic Resources
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The ITPGRFA Annex 1 list the crops regulated by this treaty.
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-->
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<xs:element name="GermplasmTreatiesAndRegulations" substitutionGroup="dwc:anyClass">
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<xs:complexType>
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<xs:sequence>
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<!-- <xs:element ref="dwc:SampleID" minOccurs="1"/> -->
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<xs:element ref="gr:GermplasmID" minOccurs="1"/>
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<xs:element ref="gr:anyGermplasmRegulationTerm" minOccurs="0" maxOccurs="unbounded"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<!-- <xs:element name="SampleID" substitutionGroup="dwc:anyIdentifier"/> -->
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<xs:element name="anyGermplasmRegulationTerm" abstract="true" substitutionGroup="dwc:anyProperty"/>
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<xs:element name="GermplasmRegulationID" substitutionGroup="dwc:anyIdentifier"/>
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<xs:element name="TreatyOrRegulationName" substitutionGroup="gr:anyGermplasmRegulationTerm"/>
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<xs:element name="TreatyOrRegulationGoverningBody" substitutionGroup="gr:anyGermplasmRegulationTerm"/>
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<!-- SAMPLE ACQUISITION (DONOR EVENT) -->
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<!--
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Will the donor/acquisition class also need the reference to the genebank institute
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receiving the sample to keep track of a chain of donor events
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proceeding the donation of the sample to the holding genebank...?
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-->
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<xs:element name="SampleAcquisition" substitutionGroup="dwc:anyClass">
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<xs:complexType>
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<xs:sequence>
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<xs:element ref="gr:GermplasmID" minOccurs="1"/>
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<!--
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<xs:element ref="dwc:SampleID" minOccurs="1"/>
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<xs:any namespace="##other" maxOccurs="unbounded" minOccurs="0"/>
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-->
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<xs:element ref="gr:anySampleAcquisitionTerm" minOccurs="0" maxOccurs="unbounded"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<xs:element name="anySampleAcquisitionTerm" abstract="true" substitutionGroup="dwc:anyProperty"/>
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<xs:element name="SampleAcquisitionID" substitutionGroup="dwc:anyIdentifier"/>
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<xs:element name="DonorsSampleIdentifier" substitutionGroup="dwc:anyIdentificationTerm"/>
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<xs:element name="SampleAcquisitionSource" substitutionGroup="gr:anySampleAcquisitionTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 22: Collecting/acquisition source, COLLSRC.
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Coded as integer value, defined enumeration.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="SampleAcquisitionDate" substitutionGroup="gr:anySampleAcquisitionTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 12: Acquisition date, ACQDATE.
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Date when the germplasm sample (accession) entered the genebank collection.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="DonorInstituteCode" substitutionGroup="gr:anySampleAcquisitionTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 23: Donor institute code, DONORCODE
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FAO WIEWS institute code for the donor institute.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="DonorInstitute" substitutionGroup="gr:anySampleAcquisitionTerm">
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<xs:annotation>
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<xs:documentation>
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(MCPD term 23): Donor institute name.
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If the FAO WIEWS institute code is available, this term should not be reported.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="SampleAcquisitionRemarks" substitutionGroup="gr:anySampleAcquisitionTerm"/>
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<!-- BREEDING EVENT (Cultivation event, "similar" but different from Sampling Event) -->
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<!-- These breeder terms may not need a separate class, only one instance per sample -->
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<xs:element name="BreedingEventGroup" substitutionGroup="dwc:anyClass">
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<xs:complexType>
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<xs:sequence>
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<xs:element ref="gr:GermplasmID" minOccurs="1"/>
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<!--
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<xs:element ref="dwc:SampleID" minOccurs="1"/>
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<xs:element ref="gr:BreedingEventID" minOccurs="1"/>
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<xs:any namespace="##other" maxOccurs="unbounded" minOccurs="0"/>
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-->
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<xs:element ref="gr:anyBreedingEventTerm" minOccurs="0" maxOccurs="unbounded"/>
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</xs:sequence>
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</xs:complexType>
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</xs:element>
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<xs:element name="anyBreedingEventTerm" abstract="true" substitutionGroup="gr:anyProperty"/>
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<xs:element name="BreedingEventID" substitutionGroup="gr:anyIdentifier"/>
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<xs:element name="BreedersSampleIdentifier" substitutionGroup="gr:anyBreedingEventTerm"/>
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<xs:element name="BreedingYear" substitutionGroup="gr:anyBreedingEventTerm"/>
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<xs:element name="BreederPerson" substitutionGroup="gr:anyBreedingEventTerm"/>
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<xs:element name="BreederInstituteCode" substitutionGroup="gr:anyBreedingEventTerm">
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<xs:annotation>
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<xs:documentation>
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MCPD term 19: Breeding institute code, BREDCODE
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FAO WIEWS institute code for the breeding institute.
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</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="BreederInstitute" substitutionGroup="gr:anyBreedingEventTerm">
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<xs:annotation>
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<xs:documentation>
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(MCPD term 19): Breeder institute name.
|
|
If the FAO WIEWS institute code is available, this term should not be reported.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="BreedingCountry" substitutionGroup="gr:anyBreedingEventTerm"/>
|
|
<xs:element name="BreedingCountryCode" substitutionGroup="gr:anyBreedingEventTerm"/>
|
|
<xs:element name="BreedingEventRemarks" substitutionGroup="gr:anyBreedingEventTerm"/>
|
|
|
|
<!--
|
|
INFO: mapping of other MCPD terms to DwC terms2
|
|
|
|
dwc:CatalogNumber MCPD term: 2: Accession number, ACCENUMB (unique identifier for samples within a genebank collection)
|
|
|
|
-->
|
|
|
|
|
|
|
|
|
|
<!-- ************************************** -->
|
|
<!-- Germplasm trait measurement data (C&E) -->
|
|
<!-- ************************************** -->
|
|
|
|
<!--
|
|
Germplasm Trait Measurements (extends DarwinCore MeasurementOrFact)
|
|
|
|
DRAFT data exchange format for germplasm trait measurements (C&E).
|
|
DRAFT descriptors developed for the European ECPGR community as part of EPGRIS3 (workshop 2009-05-07 in Bonn).
|
|
See: http://www.epgris3.eu/
|
|
See: http://www.epgris3.eu/EPGRIS3%2020090507workshop.htm
|
|
See: http://www.ecpgr.cgiar.org/
|
|
|
|
DATASET
|
|
UPLOADERCODE
|
|
DATASET_REMARK
|
|
EXPERIMENT
|
|
EXPERIMENT_NUMBER
|
|
EXPERIMENT_DESCRIPTION
|
|
EXPERIMENT_YEAR
|
|
EXPERIMENT_YEAR
|
|
EXPERIMENT_LONGITUDE
|
|
EXPERIMENT_LATITUDE
|
|
EXPERIMENT_REPORT
|
|
TRAIT
|
|
TRAIT_NUMBER
|
|
TRAIT_NAME
|
|
TRAIT_REMARK
|
|
TRAIT_METHOD
|
|
GENOTYPE
|
|
GENOTYPE_NUMBER
|
|
GENOTYPE_NICODE
|
|
GENOTYPE_INSTCODE
|
|
GENOTYPE_ACCENUMB
|
|
GENOTYPE_GENUS
|
|
SCORE
|
|
GENOTYPE_NUMBER
|
|
EXPERIMENT_NUMBER
|
|
TRAIT_NUMBER
|
|
SCORE
|
|
|
|
MAPPING of EPGRIS3 TRAIT terms to the standards DwC core terms
|
|
dwc:measurementID SCORE_ID
|
|
dwc:measurementType perhaps use this instead of defining GermplasmTraitClass below...?
|
|
dwc:measurementValue SCORE
|
|
dwc:measurementAccuracy SCORE_ACCURACY (not in the draft Germplasm Trait format, EPGRIS3 C&E)
|
|
dwc:measurementUnit SCORE_UNIT
|
|
dwc:measurementDeterminedDate SCORE_DATE
|
|
dwc:measurementDeterminedBy SCORE_PERSON
|
|
dwc:measurementMethod GermplasmExperimentClass defined below for more details (atomized acording to EPGRIS3 C&E)
|
|
dwc:measurementRemarks SCORE_REMARKS (not in the draft Germplasm Trait format, EPGRIS3 C&E)
|
|
-->
|
|
|
|
<xs:element name="MeasurementByInstituteCode" substitutionGroup="dwc:anyMeasurementTerm">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Germplasm trait observation determined by institute code, INSTCODE.
|
|
FAO WIEWS institute code for the institute performing the observation/measurement.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="MeasurementGrowthStage" substitutionGroup="dwc:anyMeasurementTerm">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Germplasm term to describe the growth stage of the plant when the trait observation or measurement was made.
|
|
Examples include: Ripening, heading, ...
|
|
A modifier of the TDWG SDD style could be applied here to be more generic and include modifiers like
|
|
for example part of the plant where the observation was made (eg. leaf, stem, seeds).
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
|
|
|
|
<!-- **************** -->
|
|
<!-- TRAIT DESCRIPTOR -->
|
|
<!-- **************** -->
|
|
<!-- Germplasm Trait is the definition of the observation descriptor (extends measurementMethod) -->
|
|
<xs:element name="GermplasmTraitID" substitutionGroup="gr:anyGermplasmID">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Trait ID, Germplasm Trait Descriptor (Measurement Descriptor).
|
|
May eventually develop into a controlled and currated ontology for trait descriptors.
|
|
Each trait descriptor could eventually be identified by a GUID, for example LSID.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<!-- Multiple Germplasm Trait Descriptors -->
|
|
<xs:element name="GermplasmTraitGroup" substitutionGroup="dwc:anyClass">
|
|
<xs:complexType>
|
|
<xs:sequence>
|
|
<xs:element ref="gr:GermplasmTraitID" minOccurs="1"/>
|
|
<xs:element ref="gr:anyGermplasmTraitTerm" minOccurs="0" maxOccurs="unbounded"/>
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="anyGermplasmTraitTerm" abstract="true" substitutionGroup="gr:anyProperty"/>
|
|
<xs:element name="GermplasmTraitIdentifier" substitutionGroup="gr:anyGermplasmTraitTerm"><!-- TRAIT_NAME -->
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
EPGRIS3: TRAIT_NAME
|
|
English name of the trait
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmTraitClass" substitutionGroup="gr:anyGermplasmTraitTerm">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Classification of the trait descriptor (a standard controlled vocabulary could be developed).
|
|
Examples include: Agrobotanical, morphological, chemical, phenological, molecular biology,
|
|
disease susceptibility/resistance, tolerance (abiotic), utilization.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmTraitScale" substitutionGroup="gr:anyGermplasmTraitTerm">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Scale used for the observations/measurements.
|
|
Absolute, interval, nominal, ordinal, ratio, or relative values.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmTraitSource" substitutionGroup="gr:anyGermplasmTraitTerm">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Reference to the source standard Germplasm Descriptor.
|
|
For example the UPOV descriptor or the Bioversity Crop Descriptor identifier.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmTraitRemarks" substitutionGroup="gr:anyGermplasmTraitTerm"/>
|
|
|
|
|
|
<!-- **************** -->
|
|
<!-- TRAIT EXPERIMENT -->
|
|
<!-- **************** -->
|
|
<!-- Germplasm Experiment is the description of the trait observation event/project/experiment -->
|
|
<xs:element name="GermplasmExperimentID" substitutionGroup="gr:anyGermplasmID">
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
Experiment ID, Germplasm Trait Descriptor (Measurement Event).
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<!-- Multiple Germplasm Trait Experiments -->
|
|
<xs:element name="GermplasmExperimentGroup" substitutionGroup="dwc:anyClass">
|
|
<xs:complexType>
|
|
<xs:sequence>
|
|
<xs:element ref="gr:GermplasmExperimentID" minOccurs="1"/>
|
|
<xs:element ref="gr:anyGermplasmExperimentTerm" minOccurs="0" maxOccurs="unbounded"/>
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="anyGermplasmExperimentTerm" abstract="true" substitutionGroup="gr:anyProperty"/>
|
|
<xs:element name="GermplasmExperimentIdentifier" substitutionGroup="gr:anyGermplasmExperimentTerm"><!-- EXPERIMENT_NUMBER -->
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
EPGRIS3: EXPERIMENT_NUMBER
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmExperimentRemarks" substitutionGroup="gr:anyGermplasmExperimentTerm"><!-- EXPERIMENT_DESCRIPTION -->
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
EPGRIS3: EXPERIMENT_DESCRIPTION
|
|
Information relevant for the interpretation of the scores in the experiment
|
|
such as experimental design, location, experimentor, weather, etc.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmExperimentYear" substitutionGroup="gr:anyGermplasmExperimentTerm"><!-- EXPERIMENT_YEAR -->
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
EPGRIS3: EXPERIMENT_YEAR
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
<xs:element name="GermplasmExperimentReport" substitutionGroup="gr:anyGermplasmExperimentTerm"><!-- EXPERIMENT_REPORT -->
|
|
<xs:annotation>
|
|
<xs:documentation>
|
|
EPGRIS3: EXPERIMENT_REPORT
|
|
A reference to the report of the experiment, either supplied as the file name or the URL of the report.
|
|
</xs:documentation>
|
|
</xs:annotation>
|
|
</xs:element>
|
|
|
|
|
|
|
|
|
|
|
|
<!-- *************** -->
|
|
<!-- Cultivar domain -->
|
|
<!-- *************** -->
|
|
<!-- FAO have developed a cultivar database -->
|
|
<!-- NB! Probably much better to take this out in separate extension...! -->
|
|
<!-- FAO to develop this extension...? -->
|
|
<!--
|
|
<xs:group name="CultivarGroup">
|
|
<xs:sequence>
|
|
<xs:choice maxOccurs="unbounded">
|
|
<xs:element ref="dwc:anyIdentifier"/>
|
|
<xs:element ref="dwc:anyClass"/>
|
|
<xs:element ref="gr:anyCultivarTerm" minOccurs="0" maxOccurs="unbounded"/>
|
|
</xs:choice>
|
|
</xs:sequence>
|
|
</xs:group>
|
|
<xs:element name="anyCultivarTerm" abstract="true" substitutionGroup="cultivar:anyProperty"/>
|
|
<xs:element name="CultivarID" substitutionGroup="cultivar:anyIdentifier"/>
|
|
<xs:element name="CultivarName" substitutionGroup="cultivar:anyIdentificationTerm"/>
|
|
-->
|
|
|
|
|
|
|
|
|
|
</xs:schema> |