191 lines
5.6 KiB
Plaintext
191 lines
5.6 KiB
Plaintext
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head 1.4;
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access;
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symbols;
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locks; strict;
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comment @# @;
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1.4
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date 2007.03.13.12.16.01; author RicardoPereira; state Exp;
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branches;
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next 1.3;
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1.3
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date 2006.06.09.16.24.15; author RodericPage; state Exp;
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branches;
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next 1.2;
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1.2
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date 2006.06.09.16.04.54; author RodericPage; state Exp;
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branches;
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next 1.1;
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1.1
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date 2006.02.13.20.54.34; author RicardoPereira; state Exp;
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branches;
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next ;
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desc
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@
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.
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@
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1.4
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log
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@none
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@
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text
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@%META:TOPICINFO{author="RicardoPereira" date="1173788161" format="1.1" version="1.4"}%
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---++ LSID Based Integration Ants Demonstration
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*Coordinator(s):*
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Rod Page
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*Participants:*
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----
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---+++ Description
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The original description was: "This group will develop a prototype system that integrates LSID based data. It will use ants as specific taxon group."
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This is sort of what I've done. What I'm aiming for is something like the diagram below, where diverse sources of data are integrated into a triple store. The two key issues of relevance to TDWG GUID are the use of GUIDs to identify digital objects, and the use of metadata as RDF.
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<img class="center" alt="" title="idea" src="http://photos1.blogger.com/blogger/4123/605/400/GoogleAnt.0.jpg" >
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For details on how this was done, please see [[http://semant.blogspot.com/][my blog]] (I find it a lot easier to blog stuff as it gets done, rather than edit a Wiki).
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----
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---+++ Technical Information
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* *URL for prototype user interface:* http://linnaeus.zoology.gla.ac.uk/~rpage/ants/
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* *LSID authority(ies):* ncbi.nlm.nih.gov.lsid.gla.ac.uk (served from Glasgow), lsid.gla.ac.uk
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* *LSID namespace(s):* pubmed, taxon, gi, predicates
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* *Hardware platform:* Apple iBook G4 for prototyping, Generic PC server (AMD 1.4 GHz CPU, 512 Mb RAM, 130 Gb hard disk)
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* *Server platform:* Fedora Core 4, Apache 2.0.54, MySQL 4.1.11, PHP 5.0.4
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* *LSID Software stack used:* Modification of Roger Hyam's PHP code
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* *RDF/OWL ontology used for metadata:* Dublin Core, PRISM, FOAF, uBio, home grown
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* *Approximate number of LSIDs stored:* Around 360,000 triples
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* *Benchmarchs:* Too embarrassing to mention
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* *Other resources:*
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* Google Maps API http://www.google.com/apis/maps/
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* Connotea RSS feed http://www.connotea.org/
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* 3Store 2.2.22 http://sourceforge.net/projects/threestore/
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* GraphViz http://www.graphviz.org
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* numerous Perl scripts
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* and a C++ program to populate triple store http://iphylo.blogspot.com/2006/05/ants-rdf-and-triple-stores.html
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----
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---+++ Roadmap, Milestones, Timeline
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See http://semant.blogspot.com/.
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----
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---+++ Discussion, Implementation Issues
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For background please see http://semant.blogspot.com/.
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The server has two IP's, and this causes Google Maps some confusion -- if you get a warning about the Google Maps API key, just ignore it.
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----
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---+++ Lessons Learned, Conclusions, Recommendations
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Don't try this at home...
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----
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---+++++ Categories
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CategoryWorkingGroup
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CategoryPrototypingWG
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@
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1.3
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log
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@
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.
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@
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text
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@d1 1
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d23 16
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a38 10
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*URL for prototype user interface:* http://linnaeus.zoology.gla.ac.uk/~rpage/ants/
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*LSID authority(ies):* ncbi.nlm.nih.gov.lsid.gla.ac.uk (served from Glasgow), lsid.gla.ac.uk
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*LSID namespace(s):* pubmed, taxon, gi, predicates
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*Hardware platform:* Apple iBook G4 for prototyping, Generic PC server (AMD 1.4 GHz CPU, 512 Mb RAM, 130 Gb hard disk)
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*Server platform:* Fedora Core 4, Apache 2.0.54, MySQL 4.1.11, PHP 5.0.4
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*LSID Software stack used:* Modification of Roger Hyam's PHP code
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*RDF/OWL ontology used for metadata:* Dublin Core, PRISM, FOAF, uBio, home grown
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*Approximate number of LSIDs stored:* Around 360,000 triples
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*Benchmarchs:* Too embarrassing to mention
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*Other resources:* Google Maps API http://www.google.com/apis/maps/, Connotea RSS feed http://www.connotea.org/, 3Store 2.2.22 http://sourceforge.net/projects/threestore/, GraphViz http://www.graphviz.org, numerous Perl scripts and a C+ + program to populate triple store http://iphylo.blogspot.com/2006/05/ants-rdf-and-triple-stores.html
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d64 1
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a64 1
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CategoryPrototypingWG@
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1.2
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log
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@First update by Rod Page
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.
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@
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text
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@d17 1
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a17 1
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d23 4
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a26 4
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*LSID authority(ies):* ncbi.nlm.nih.gov.lsid.gla.ac.uk (served from Glasgow)
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*LSID namespace(s):* pubmed, taxon, gi
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*Hardware platform:* Apple iBook G4 for prototyping, Generic PC (AMD 1.4 GHz, 512 Mb RAM, 130 Gb hard disk)M
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*Server platform:* Fedora Core 4, Apache 2, MySQL, PHP 5
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d28 1
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a28 1
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*RDF/OWL ontology used for metadata:* Dublin Core, PRISM, FOAF, uBio, own
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d31 1
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a31 1
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*Other resources:* Google Maps API http://www.google.com/apis/maps/, Connotea RSS feed http://www.connotea.org/, 3Store 2.2.22 http://sourceforge.net/projects/threestore/
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d43 2
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@
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1.1
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log
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@Initial revision
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@
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text
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@d5 2
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d11 6
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a16 1
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This group will develop a prototype system that integrates LSID based data. It will use ants as specific taxon group.
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d22 10
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a31 10
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*URL for prototype user interface:*
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*LSID authority(ies):*
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*LSID namespace(s):*
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*Hardware platform:* (Intel, Sun, etc - include complete specs: processors, amount of RAM, disk, SCSI, ATA, SATA, RAID, etc)
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*Server platform:* (OS, Webserver, DBMS, programming language - please include versions)
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*LSID Software stack used:* (Java, Perl, .NET - client and/or server - please include versions)
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*RDF/OWL ontology used for metadata:* (URI to ontology)
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*Approximate number of LSIDs stored:*
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*Benchmarchs:*
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*Other resources:*
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d36 1
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a36 4
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(Enter one task per line with estimated time for completion. Check tasks when completed, but leave all entries for logging purposes)
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Example:
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* Mar/06 - Set up webserver
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* Apr/06 - Install LSID server stack and map data tables
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d41 1
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a41 1
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(List issues, readblocks, missing software components, etc)
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d47 1
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d55 1
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a55 1
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CategoryPrototypingWG
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@
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