896 lines
21 KiB
Plaintext
896 lines
21 KiB
Plaintext
head 1.32;
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access;
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symbols;
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locks; strict;
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date 2007.07.31.10.06.22; author GregorHagedorn; state Exp;
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branches;
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date 2007.05.07.21.56.26; author GregorHagedorn; state Exp;
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date 2007.04.17.16.34.28; author GregorHagedorn; state Exp;
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date 2006.09.07.07.19.07; author DonovanSharp; state Exp;
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1.1
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date 2006.06.01.02.24.17; author DonovanSharp; state Exp;
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next ;
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desc
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@@
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1.32
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log
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@none
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@
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text
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@%META:TOPICINFO{author="GregorHagedorn" date="1185876382" format="1.1" version="1.32"}%
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---++SDD Part 0: Introduction and Primer to the SDD Standard
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---+++Table of Contents
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* 1 [[SddIntroduction][Introduction]]
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* 2 Streams
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* 2.1 [[CodedData][Using SDD for coded summary descriptions]]
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* 2.2 [[CodedSampleDescription][Using SDD for coded sample descriptions]]
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* 2.3 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]]
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* 2.4 [[IdentificationKeys][Using SDD for branching (i.e. dichotomous/polytomous) keys]]
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* 3 Basics
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* 3.1 [[SddDatasets][Datasets in SDD documents]]
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* 3.2 [[TechnicalMetadata][Technical metadata]]
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* 3.3 [[DatasetMetadata][Dataset metadata]]
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* 3.4 [[TaxonNames][Defining taxon names]]
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* 3.5 [[SpecimenNames][Defining specimen names]]
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* 3.6 [[SddCharacters][Characters]]
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* 3.6.1 Categorical characters
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* 3.6.2 Quantitative characters
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* 3.6.3 Text characters
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* 3.6.4 Sequence characters
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* 3.7 [[TaxonHierarchies][Taxon hierarchies]]
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* 3.8 [[CharacterHierarchies][Character hierarchies]]
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* 3.9 [[SddAudiences][Defining intended audience in SDD]]
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* 3.10 [[SddLanguage][Language support in SDD]]
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* 3.11 [[SddDependencies][Dependencies in SDD]]
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* 3.12 [[SddMedia][Attaching Media to SDD Items]]
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* 3.13 [[SddMapping][Mapping one character onto another]]
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* 3.14 [[SddAgents][Referencing contributors and sources]]
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* 3.15 [[DescriptiveConcepts][Data modifier definitions ( 3.17.1)]]
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* 3.16 [[DescriptiveConcepts][Character grouping concepts within SDD (3.17.2)]]
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* 3.17 [[DescriptiveConcepts][Sharing states across characters (Concept States, 3.17.3) ]]
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* 3.18 [[SddPublications][Referencing publications]]
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* 3.19 [[SddScope][Defining the scope of SDD output]]
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* 4 [[SddFaq][FAQs]]
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* 4.1 [[SuggestedCitations][Suggested citations]]
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@
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1.31
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log
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@none
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@
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text
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@d1 1
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a1 1
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%META:TOPICINFO{author="GregorHagedorn" date="1178574986" format="1.1" version="1.31"}%
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d31 3
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a33 3
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* 3.15 [[DescriptiveConcepts][Using modifiers with SDD data]]
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* 3.16 [[DescriptiveConcepts][Use of grouping concept within SDD]]
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* 3.17 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
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@
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1.30
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@none
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@
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text
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@d1 1
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a1 1
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%META:TOPICINFO{author="GregorHagedorn" date="1176827668" format="1.1" version="1.30"}%
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d11 1
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a11 1
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* 2.4 [[DichotomousKeys][Using SDD for dichotomous keys]]
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d37 1
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@
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1.29
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@d1 1
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a1 2
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%META:TOPICINFO{author="DonovanSharp" date="1157613547" format="1.1" version="1.29"}%
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%META:TOPICPARENT{name="WebTopicList"}%
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d36 1
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a36 1
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* 4 [[SddFaq][FAQs]]@
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1.28
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1156901517" format="1.1" version="1.28"}%
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d37 1
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a37 1
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* 5 [[SddFaq][FAQs]]
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@
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1.27
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text
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1156821170" format="1.1" version="1.27"}%
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d20 4
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a23 4
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* 3.5.1 Categorical characters
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* 3.5.2 Quantitative characters
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* 3.5.3 Text characters
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* 3.5.4 Sequence characters
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@
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1.26
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153703090" format="1.1" version="1.26"}%
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d18 2
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a19 2
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* 3.4 [[SpecimenNames][Defining specimen names]]
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* 3.5 [[SddCharacters][Characters]]
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d24 13
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a36 13
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* 3.6 [[TaxonHierarchies][Taxon hierarchies]]
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* 3.7 [[CharacterHierarchies][Character hierarchies]]
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* 3.8 [[SddAudiences][Defining intended audience in SDD]]
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* 3.9 [[SddLanguage][Language support in SDD]]
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* 3.10 [[SddDependencies][Dependencies in SDD]]
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* 3.11 [[SddMedia][Attaching Media to SDD Items]]
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* 3.12 [[SddMapping][Mapping one character onto another]]
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* 3.13 [[SddAgents][Referencing contributors and sources]]
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* 3.14 [[DescriptiveConcepts][Using modifiers with SDD data]]
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* 3.15 [[DescriptiveConcepts][Use of grouping concept within SDD]]
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* 3.16 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
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* 3.17 [[SddPublications][Referencing publications]]
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* 3.18 [[SddScope][Defining the scope of SDD output]]
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@
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1.25
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153361153" format="1.1" version="1.25"}%
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d24 4
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a27 4
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* 3.8 [[TaxonHierarchies][Taxon hierarchies]]
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* 3.9 [[CharacterHierarchies][Character hierarchies]]
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* 3.6 [[SddAudiences][Defining intended audience in SDD]]
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* 3.7 [[SddLanguage][Language support in SDD]]
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d29 8
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a36 8
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* 4.2 [[SddMedia][Attaching Media to SDD Items]]
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* 4.3 [[SddMapping][Mapping one character onto another]]
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* 4.6 [[SddAgents][Referencing contributors and sources]]
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* 4.8 [[DescriptiveConcepts][Using modifiers with SDD data]]
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* 4.8 [[DescriptiveConcepts][Use of grouping concept within SDD]]
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* 4.8 [[DescriptiveConcepts][Applying descriptive concepts across SDD datasets]]
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* 4.9 [[SddPublications][Referencing publications]]
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* 4.10 [[SddScope][Defining the scope of SDD output]]
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@
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1.24
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153357214" format="1.1" version="1.24"}%
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a28 1
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* 3.11 [[SddSpecimen][Specimens in SDD documents]]
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@
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1.23
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153280274" format="1.1" version="1.23"}%
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a27 1
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@
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1.22
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@d1 1
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a1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153271741" format="1.1" reprev="1.22" version="1.22"}%
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d24 2
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d28 1
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a28 2
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* 3.8 [[TaxonHierarchies][Taxon hierarchies]]
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* 3.9 [[CharacterHierarchies][Character hierarchies]]
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d36 1
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a36 1
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* 4.8 [[DescriptiveConcepts][Applying descriptive concepts accros SDD datasets]]
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a39 1
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@
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1.21
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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153184758" format="1.1" reprev="1.21" version="1.21"}%
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d24 1
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a24 1
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* 3.6 [[SddAudiences][SDD audiences]]
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a29 1
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* 4.1 [[CodedDescription][<CodedDescription>]]
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d33 3
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a35 2
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* 4.7 [[DescriptiveTerminology][<DescriptiveTerminology>]]
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* 4.8 [[DescriptiveConcepts][<DescriptiveConcepts>]]
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d37 1
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a37 1
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* 4.10 [[SddScope][<Scope>]]
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@
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1.20
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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153179750" format="1.1" reprev="1.20" version="1.20"}%
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a29 1
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* 4 Miscellaneous elements
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d31 3
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a33 5
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* 4.2 [[SddMedia][<Media>]]
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* 4.3 [[SddMapping][<Mapping>]]
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* 4.4 [[SummaryData][<SummaryData>]]
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* 4.5 [[SampleData][<SampleData>]]
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* 4.6 [[SddAgents][<Agents>]]
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d36 1
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a36 1
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* 4.9 [[SddPublications][<Publications>]]
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@
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1.19
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@d1 1
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%META:TOPICINFO{author="DonovanSharp" date="1153114952" format="1.1" reprev="1.19" version="1.19"}%
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a7 6
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* [[DocumentStatus][Status of this document]]
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* 1.1 Background to the TDWG-SDD Subgroup
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* 1.2 The nature of descriptive data in taxonomy
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* 1.3 Goals of SDD
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* 1.4 Basic structure of a simple SDD instance document
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* 1.5 Beyond the simple instance...
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a9 6
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* 2.1.1 What are coded summary descriptions?
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* 2.1.2 SDD for summary descriptions
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* Box 2.1.1.1 - Simple examples of coded summary descriptions
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* 2.1.3 SDD for sample data
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* Box 2.1.1.2 - Example of raw (sample) descriptive data
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* 2.1.2 Elements of structured data in SDD
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a10 1
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* 2.1.1 What are coded sample descriptions?
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a11 4
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* 2.3.1 Traditional natural language descriptions
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* Box 2.3.1 - Typical natural language descriptions
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* 2.3.2 Authored natural language descriptions
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* 2.3.3 Marked up natural language descriptions
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a12 6
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* 2.4.1 Traditional dichotomous keys
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* Box 2.4.1 - Typical dichotomous keys
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* 2.4.2 SDD representation of dichotomous keys
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* 2.4.3 Dichotomous keys using statements
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* 2.4.4 Dichotomous keys using questions
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* 2.4.5 Optional elements in SDD dichotomous keys
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a17 2
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* 3.4.1 Defining [[TaxonNames][taxon names]]
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* 3.4.2 Elements within the [[TaxonNames][<TaxonNames>]] element
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a23 1
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* 3.5.5 Color range characters
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a26 1
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* 3.9.1 Taxon hierarchy elements
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@
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1.18
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%META:TOPICINFO{author="DonovanSharp" date="1152255412" format="1.1" version="1.18"}%
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a42 7
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* 3.4.2.1 <NomenclaturalCode>
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* 3.4.2.2 <Rank>
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* 3.4.2.3 <CanonicalName>
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* 3.4.2.4 <CanonicalAuthorship>
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* 3.4.2.5 <ConceptSuffix>
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* 3.4.2.6 <Race>
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* 3.4.2.7 <TaxonPlacement>
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a48 5
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* 3.5.4.1 <Assumptions>
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* 3.5.4.1 <SequenceType>
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* 3.5.4.1 <SymbolLength>
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* 3.5.4.1 <GapSymbol>
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* 3.5.4.1 <EnableAmbiguitySymbols>
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a53 3
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* 3.9.1.1 [[SddScope][<Scope>]]
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* 3.9.1.2 <TaxonHierarchyType>
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* 3.9.1.3 [[SddNodes][<Nodes>]]
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a54 4
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* 3.9.1 [[SddScope][<Scope>]]
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* 3.9.2 <DesignedFor>
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* 3.9.3 <ShouldContainAllCharacters>
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* 3.9.4 [[SddNodes][<Nodes>]]
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d69 1
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@
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1.17
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%META:TOPICINFO{author="KevinThiele" date="1152158455" format="1.1" reprev="1.17" version="1.17"}%
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d50 1
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a87 1
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@
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1.16
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%META:TOPICINFO{author="DonovanSharp" date="1152149703" format="1.1" version="1.16"}%
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a6 1
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d15 2
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d15 3
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a17 5
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* 2.1 [[CodedData][Using SDD for coded summary data]]
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* 2.1.1 What is coded summary data?
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* 2.1 [[CodedData][Using SDD for coded data]]
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* 2.1.1 What is coded data?
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* 2.1.2 SDD for summary data
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* 2.2 [[NaturalLanguageDescriptions][Using SDD for natural language descriptions]]
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* 2.2.1 Traditional natural language descriptions
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* Box 2.2.1 - Typical natural language descriptions
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* 2.2.2 Authored natural language descriptions
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* 2.2.3 Marked up natural language descriptions
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* 2.3 [[DichotomousKeys][Using SDD for dichotomous keys]]
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* 2.3.1 Traditional dichotomous keys
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* Box 2.3.1 - Typical dichotomous keys
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* 2.3.2 SDD representation of dichotomous keys
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* 2.3.3 Dichotomous keys using statements
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* 2.3.4 Dichotomous keys using questions
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* 2.3.5 Optional elements in SDD dichotomous keys
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* 3.2 TechnicalMetadata
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* 3.4.1 Defining TaxonNames
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* 3.4.2 Elements within TaxonNames
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* 3.4.2.1 NomenclaturalCode
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* 3.4.2.2 Rank
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* 3.4.2.3 CanonicalName
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* 3.4.2.4 CanonicalAuthorship
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* 3.4.2.5 ConceptSuffix
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* 3.4.2.6 Race
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* 3.4.2.7 TaxonPlacement
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* 3.5.4.1 Assumptions
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* 3.5.4.1 SequenceType
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* 3.5.4.1 SymbolLength
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* 3.5.4.1 GapSymbol
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* 3.5.4.1 EnableAmbiguitySymbols
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* 3.8 TaxonHierarchies
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* 3.9.1 TaxonHierarchy elements
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* 3.9.1.1 [[SddScope][Scope]]
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* 3.9.1.2 TaxonHierarchyType
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* 3.9.1.3 [[SddNodes][Nodes]]
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* 3.9 CharacterHierarchies
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* 3.9.1 [[SddScope][Scope]]
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* 3.9.2 DesignedFor
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* 3.9.3 ShouldContainAllCharacters
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* 3.9.4 [[SddNodes][Nodes]]
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* 4 Miscellaneous
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* 4.1 CodedDescription
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* 4.2 [[SddMedia][Media]]
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* 4.3 [[SddMapping][Mapping]]
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* 4.4 SummaryData
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* 4.5 SampleData
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* 4.6 [[SddAgents][Agents]]
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* 4.7 DescriptiveTerminology
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* 4.8 DescriptiveConcepts
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* 4.9 [[SddPublications][Publications]]
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2.4 Using SDD for raw observation data
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6 FAQs
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* 4.? CodedDescription
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* 4.? [[SddMedia][Media]]
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* 4.? [[SddMapping][Mapping]]
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* 4.? SummaryData
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* 4.? SampleData
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* 4.? [[SddAgents][Agents]]
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* 4.? DescriptiveTerminology
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* 4.? DescriptiveConcepts
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* 4.? [[SddPublications][Publications]]
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* 3.4.2.1 CanonicalName
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* 3.4.2.1 CanonicalAuthorship
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* 3.4.2.1 ConceptSuffix
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* 3.9 [[CharacterHierarchies][Character heirarchies]]
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* Box 2.1.1.2 - Example of raw (specimen) descriptive data
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4 Elements
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5 Miscellaneous
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* 3.4 [[TaxonNames]][Defining taxon names]]
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<body>
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<table border="0" cellpadding="0" cellspacing="0" style="border-collapse: collapse" bordercolor="#111111" width="100%" id="AutoNumber3">
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<tr>
|
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<td align="center">
|
|
<h1>SDD Part 0: Introduction and Primer to the SDD Standard</h1>
|
|
</td>
|
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</tr>
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</table>
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<h2>Table of Contents</h2>
|
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<p>
|
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Contents<br>
|
|
1 <a href="Introduction.htm">Introduction</a><br>
|
|
1.1 Background to the TDWG-SDD Subgroup<br>
|
|
1.2 The nature of descriptive data in taxonomy<br>
|
|
1.3 Goals of SDD<br>
|
|
1.4 Basic structure of a simple SDD instance document<br>
|
|
1.5 Beyond the simple instance...<br>
|
|
d49 4
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a52 47
|
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2 Streams<br>
|
|
<a href="SDD_coded_data.htm">2.1 Using SDD for coded data</a><br>
|
|
2.1.1 What is coded data?<br>
|
|
Box 2.1.1.1 - Simple examples of coded summary descriptions<br>
|
|
Box 2.1.1.2 - Example of raw (specimen) descriptive
|
|
data<br>
|
|
2.1.2 Elements of structured data in SDD<br>
|
|
<a href="SDD_natural_language.htm">2.2 Using SDD for natural language descriptions</a><br>
|
|
2.2.1 Traditional natural language descriptions<br>
|
|
Box 2.2.1 - Typical natural language descriptions<br>
|
|
2.2.2 Authored natural language descriptions<br>
|
|
2.2.3 Marked up natural language descriptions<br>
|
|
<a href="SDD_dichotomous.htm">2.3 Using SDD for dichotomous keys</a><br>
|
|
2.3.1 Traditional dichotomous keys<br>
|
|
Box 2.3.1 - Typical dichotomous keys<br>
|
|
2.3.2 SDD representation of dichotomous keys<br>
|
|
2.3.3 Dichotomous keys using statements<br>
|
|
2.3.4 Dichotomous keys using questions<br>
|
|
2.3.5 Optional elements in SDD dichotomous keys<br>
|
|
|
|
3 Basics<br>
|
|
<a href="SDD_Datasets.htm">3.1 Datasets in SDD documents</a><br>
|
|
<a href="SDD_Technical_Metadata.htm">3.2 Technical metadata</a><br>
|
|
<a href="SDD_Dataset_Metadata.htm">3.3 Dataset metadata</a><br>
|
|
<a href="SDD_taxon_names.htm">3.4 Defining taxon names</a><br>
|
|
<a href="SDD_characters.htm">3.5 Characters</a><br>
|
|
3.5.1 Categorical characters<br>
|
|
3.5.2 Quantitative characters<br>
|
|
3.5.3 Text characters<br>
|
|
3.5.4 Sequence characters<br>
|
|
3.5.5 Color range characters<br>
|
|
<a href="SDD_audiences.htm">3.6 SDD audiences</a><br>
|
|
<a href="SDD_language.htm">3.7 Language support in SDD</a><br>
|
|
<a href="SDD_taxon_hierarchies.htm">3.8 Taxon heirarchies</a><br>
|
|
<a href="SDD_char_hierarchies.htm">3.9 Character heirarchies</a><br>
|
|
<a href="SDD_dependencies.htm">3.10 Dependencies in SDD</a><br>
|
|
|
|
4 Elements<br>
|
|
5 Miscellaneous<br>
|
|
2.4 Using SDD for raw observation data<br>
|
|
6 FAQs</p>
|
|
|
|
<p align="right">
|
|
<br>
|
|
|
|
</p>
|
|
</body>
|
|
@
|
|
|