89 lines
2.7 KiB
Plaintext
89 lines
2.7 KiB
Plaintext
head 1.1;
|
|
access;
|
|
symbols;
|
|
locks; strict;
|
|
comment @# @;
|
|
expand @o@;
|
|
|
|
|
|
1.1
|
|
date 2010.10.04.19.36.49; author ArlinStoltzfus; state Exp;
|
|
branches;
|
|
next ;
|
|
|
|
|
|
desc
|
|
@none
|
|
@
|
|
|
|
|
|
1.1
|
|
log
|
|
@4-taxon test case in phyloxml format
|
|
@
|
|
text
|
|
@<?xml version="1.0" encoding="UTF-8"?>
|
|
<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
|
|
<phylogeny rooted="false">
|
|
<clade>
|
|
<clade>
|
|
<branch_length>0.02428</branch_length>
|
|
<confidence type="posterior probability">0.74</confidence>
|
|
<clade>
|
|
<branch_length>0.008307</branch_length>
|
|
<taxonomy>
|
|
<id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481174</id>
|
|
<scientific_name>Mus musculus</scientific_name>
|
|
</taxonomy>
|
|
<sequence>
|
|
<accession source="NCBI">CAA25899.1</accession>
|
|
<name>Mus_musculus_CAA25899.1</name>
|
|
<mol_seq>MGDVEKGKKIFVQKCAQCHT</mol_seq>
|
|
</sequence>
|
|
</clade>
|
|
<clade>
|
|
<branch_length>0.009662</branch_length>
|
|
<taxonomy>
|
|
<id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343</id>
|
|
<scientific_name>Rattus norvegicus</scientific_name>
|
|
</taxonomy>
|
|
<sequence>
|
|
<accession source="NCBI">AAA21711.1</accession>
|
|
<name>Rattus_norvegicus_AAA21711.1</name>
|
|
<mol_seq>MGDVEKGKKIFVQKCAQCHT</mol_seq>
|
|
</sequence>
|
|
</clade>
|
|
</clade>
|
|
<clade>
|
|
<branch_length>0.040335</branch_length>
|
|
<confidence type="unknown">0.69</confidence>
|
|
<clade>
|
|
<branch_length>0.055226</branch_length>
|
|
<taxonomy>
|
|
<id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:3854553</id>
|
|
<scientific_name>Gallus gallus</scientific_name>
|
|
</taxonomy>
|
|
<sequence>
|
|
<accession source="NCBI">CAA25046.1</accession>
|
|
<name>Gallus_gallus_CAA25046.1</name>
|
|
<mol_seq>MGDIEKGKKIFVQKCSQCHT</mol_seq>
|
|
</sequence>
|
|
</clade>
|
|
<clade>
|
|
<branch_length>0.117358</branch_length>
|
|
<taxonomy>
|
|
<id provider="UBio">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481343</id>
|
|
<scientific_name>Rattus norvegicus</scientific_name>
|
|
</taxonomy>
|
|
<sequence>
|
|
<accession source="NCBI">AAA41015.1</accession>
|
|
<name>Rattus_norvegicus_AAA41015.1</name>
|
|
<mol_seq>MGDAEAGKKIFIQKCAQCHT</mol_seq>
|
|
</sequence>
|
|
</clade>
|
|
</clade>
|
|
</clade>
|
|
</phylogeny>
|
|
|
|
</phyloxml>@
|