Update README for repo structure.

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tucotuco 2023-09-15 22:57:10 -03:00
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@ -31,6 +31,8 @@ The repository structure is described below. Files/directories indicated with `G
│ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary │ ├── doe-cv-build : Directory of build scripts for the degreeOfEstablishment controlled vocabulary
│ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary │ ├── em-cv-build : Directory of build scripts for the establishmentMeans controlled vocabulary
│ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary │ ├── pw-cv-build : Directory of build scripts for the pathway controlled vocabulary
│ ├── xml : Directory for build script and configs for XML extension definitions
│ ├── ext : Directory of GENERATED XML extension definitions
│ ├── README.md : Workflow for generating a new version of the vocabulary │ ├── README.md : Workflow for generating a new version of the vocabulary
│ ├── build-termlist.ipynb : Juyter notebook to construct the term list │ ├── build-termlist.ipynb : Juyter notebook to construct the term list
│ ├── build-temlist.py : Script to build Markdown pages that provide term metadata for complex vocabularies │ ├── build-temlist.py : Script to build Markdown pages that provide term metadata for complex vocabularies
@ -43,6 +45,7 @@ The repository structure is described below. Files/directories indicated with `G
│ ├── terms.tmpl : A Jinja2 template to format the Quick Reference Guide │ ├── terms.tmpl : A Jinja2 template to format the Quick Reference Guide
│ └── workflow_diagram.png : Figure used in README.md to show how to create a new version of the standard │ └── workflow_diagram.png : Figure used in README.md to show how to create a new version of the standard
├── dist : GENERATED Distribution files generated by build.py ├── dist : GENERATED Distribution files generated by build.py
  ├── all_dwc_vertical.csv : GENERATED CSV file with all Darwin Core terms as a column
  ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row   ├── simple_dwc_horizontal.csv : GENERATED CSV file with Simple Darwin Core terms as a row
  └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column   └── simple_dwc_vertical.csv : GENERATED CSV file with Simple Darwin Core terms as a column

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dist/all_dwc_vertical.csv vendored Normal file
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type
modified
language
license
rightsHolder
accessRights
bibliographicCitation
references
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individualCount
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organismQuantityType
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lifeStage
reproductiveCondition
caste
behavior
vitality
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degreeOfEstablishment
pathway
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associatedReferences
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month
day
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habitat
samplingProtocol
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sampleSizeUnit
samplingEffort
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eventRemarks
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higherGeography
continent
waterBody
islandGroup
island
country
countryCode
stateProvince
county
municipality
locality
verbatimLocality
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maximumElevationInMeters
verbatimElevation
verticalDatum
minimumDepthInMeters
maximumDepthInMeters
verbatimDepth
minimumDistanceAboveSurfaceInMeters
maximumDistanceAboveSurfaceInMeters
locationAccordingTo
locationRemarks
decimalLatitude
decimalLongitude
geodeticDatum
coordinateUncertaintyInMeters
coordinatePrecision
pointRadiusSpatialFit
verbatimCoordinates
verbatimLatitude
verbatimLongitude
verbatimCoordinateSystem
verbatimSRS
footprintWKT
footprintSRS
footprintSpatialFit
georeferencedBy
georeferencedDate
georeferenceProtocol
georeferenceSources
georeferenceRemarks
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earliestEonOrLowestEonothem
latestEonOrHighestEonothem
earliestEraOrLowestErathem
latestEraOrHighestErathem
earliestPeriodOrLowestSystem
latestPeriodOrHighestSystem
earliestEpochOrLowestSeries
latestEpochOrHighestSeries
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lithostratigraphicTerms
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formation
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1 type
2 modified
3 language
4 license
5 rightsHolder
6 accessRights
7 bibliographicCitation
8 references
9 institutionID
10 collectionID
11 datasetID
12 institutionCode
13 collectionCode
14 datasetName
15 ownerInstitutionCode
16 basisOfRecord
17 informationWithheld
18 dataGeneralizations
19 dynamicProperties
20 occurrenceID
21 catalogNumber
22 recordNumber
23 recordedBy
24 recordedByID
25 individualCount
26 organismQuantity
27 organismQuantityType
28 sex
29 lifeStage
30 reproductiveCondition
31 caste
32 behavior
33 vitality
34 establishmentMeans
35 degreeOfEstablishment
36 pathway
37 georeferenceVerificationStatus
38 occurrenceStatus
39 associatedMedia
40 associatedOccurrences
41 associatedReferences
42 associatedTaxa
43 otherCatalogNumbers
44 occurrenceRemarks
45 organismID
46 organismName
47 organismScope
48 associatedOrganisms
49 previousIdentifications
50 organismRemarks
51 materialEntityID
52 preparations
53 disposition
54 verbatimLabel
55 associatedSequences
56 materialEntityRemarks
57 materialSampleID
58 eventID
59 parentEventID
60 eventType
61 fieldNumber
62 eventDate
63 eventTime
64 startDayOfYear
65 endDayOfYear
66 year
67 month
68 day
69 verbatimEventDate
70 habitat
71 samplingProtocol
72 sampleSizeValue
73 sampleSizeUnit
74 samplingEffort
75 fieldNotes
76 eventRemarks
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78 higherGeographyID
79 higherGeography
80 continent
81 waterBody
82 islandGroup
83 island
84 country
85 countryCode
86 stateProvince
87 county
88 municipality
89 locality
90 verbatimLocality
91 minimumElevationInMeters
92 maximumElevationInMeters
93 verbatimElevation
94 verticalDatum
95 minimumDepthInMeters
96 maximumDepthInMeters
97 verbatimDepth
98 minimumDistanceAboveSurfaceInMeters
99 maximumDistanceAboveSurfaceInMeters
100 locationAccordingTo
101 locationRemarks
102 decimalLatitude
103 decimalLongitude
104 geodeticDatum
105 coordinateUncertaintyInMeters
106 coordinatePrecision
107 pointRadiusSpatialFit
108 verbatimCoordinates
109 verbatimLatitude
110 verbatimLongitude
111 verbatimCoordinateSystem
112 verbatimSRS
113 footprintWKT
114 footprintSRS
115 footprintSpatialFit
116 georeferencedBy
117 georeferencedDate
118 georeferenceProtocol
119 georeferenceSources
120 georeferenceRemarks
121 geologicalContextID
122 earliestEonOrLowestEonothem
123 latestEonOrHighestEonothem
124 earliestEraOrLowestErathem
125 latestEraOrHighestErathem
126 earliestPeriodOrLowestSystem
127 latestPeriodOrHighestSystem
128 earliestEpochOrLowestSeries
129 latestEpochOrHighestSeries
130 earliestAgeOrLowestStage
131 latestAgeOrHighestStage
132 lowestBiostratigraphicZone
133 highestBiostratigraphicZone
134 lithostratigraphicTerms
135 group
136 formation
137 member
138 bed
139 identificationID
140 verbatimIdentification
141 identificationQualifier
142 typeStatus
143 identifiedBy
144 identifiedByID
145 dateIdentified
146 identificationReferences
147 identificationVerificationStatus
148 identificationRemarks
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150 scientificNameID
151 acceptedNameUsageID
152 parentNameUsageID
153 originalNameUsageID
154 nameAccordingToID
155 namePublishedInID
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157 scientificName
158 acceptedNameUsage
159 parentNameUsage
160 originalNameUsage
161 nameAccordingTo
162 namePublishedIn
163 namePublishedInYear
164 higherClassification
165 kingdom
166 phylum
167 class
168 order
169 superfamily
170 family
171 subfamily
172 tribe
173 subtribe
174 genus
175 genericName
176 subgenus
177 infragenericEpithet
178 specificEpithet
179 infraspecificEpithet
180 cultivarEpithet
181 taxonRank
182 verbatimTaxonRank
183 scientificNameAuthorship
184 vernacularName
185 nomenclaturalCode
186 taxonomicStatus
187 nomenclaturalStatus
188 taxonRemarks
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190 parentMeasurementID
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192 measurementValue
193 measurementAccuracy
194 measurementUnit
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197 measurementMethod
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199 resourceRelationshipID
200 resourceID
201 relationshipOfResourceID
202 relatedResourceID
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204 relationshipAccordingTo
205 relationshipEstablishedDate
206 relationshipRemarks